PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G18720.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 399aa    MW: 42140.9 Da    PI: 4.6106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G18720.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-1966115255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  OGLUM12G18720.1  66 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 115
                      789******.7*********33....35**********************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    
MAFHLQPHSL TQAKLAIDRS SSMPPSMATA RVASPSTDRK RKASSEDDID AAALTSPPAP  60
ARGRKRFVGV RQRPSGRWVA EIKDTIQKIR VWLGTFDTAE EAARAYDEAA CLLRGANTRT  120
NFWPRPSPPP AAVAPPETTT TPALPSKVTN LLLLRLKARN QQLVDAGAAA PQEAALLQLQ  180
QQTPASCQEV FVRSHGEEYG FHVDDFLSDA CSNEQYSGDS SLGLDDDDGE VEDEEEEELD  240
FQFMDVAPGA SSAAAEAGLG GEGALCSPFE MVAAELGGAV DVAAHDAMRQ MDYERKISAS  300
LYALTGVSEC LRIRAAAGAT AAARDHLTGL REACRKKQKF AAAAAAPPQQ QEPSPPPQQP  360
ETPASSGGGM SETASGGGGG DGDVLMWSSL DLAPICHMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-22ERF family protein