PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G18470.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 905aa MW: 99252.6 Da PI: 5.6183

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G18470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.5e-06	552	573	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F+r+ nL +H t+ OGLUM12G18470.1 552 PCQFCGKNFKRRGNLLNHELTC 573 6*****************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence
MASDVPQDDV QCHFCGTYLR PRSFRKHQQR CKYNPDALTR ENLPASSIPA SATRATHSEM 60 ASDGPQENCQ CSFCHKDFEG RSSCAKHELQ CKNNPDVHSQ TEPSGNAQGG IGSLDVHVPR 120 RKRTARNQPL PEQHLKKPAS DYAQGGTSDA PETPPKPTTS EVKVDSAVNA PDITIPDNKD 180 PSVMQKQKKK LDLNLQPHSD SSDQEEQADN FSSINDLSTI GTNSDKKKNT ITGVADTNIP 240 DHKDPSRMQM QIKLDLNLPP HDDSFSSMDD LNALVPADTN SDKEKKTDNG GAPADANSDK 300 EKRTDNGSVP TGTNSIKEKK TDNGGVDINI PDHKDPSARQ VQKKLSLNLP PCNDSSSSMD 360 DLKTLAPTDT NSDKETNTSN GGVDTNIPDH SDPSAMQTKN KLDFNLPPRN DSSDSLPSKN 420 PLLLLFLSHH RIQKPPASTA RRRRRAMNLV RGRVQIRRMP RPIRARAPSP ALARSVHSTR 480 GVHRERLTSK KAEEERAGRV GINKKLDSSL LVKESLPTTT WTCTDLRWVQ DFRFLLVLGF 540 AVHEMASEWD SPCQFCGKNF KRRGNLLNHE LTCKYISDVH PQTESSGDAQ ARKDILGFHI 600 PRQKRTVPTF PASDYAQGGI NGATTSEAKV DRDPEEETDV LEALLLLREQ PAYPGEETFS 660 DGEPGAGNVD DEPAASNPDK VLTMCSDKGS SSPVECYGGD ERRVGARAIA GVEEDDLNPN 720 VGCRGVTDCV DESDVIQKQK RKPDLSVADL RDLVEMKQQN MKADTNIHDQ GHPSVMQMQK 780 NELGLDLLPH KNSSDHEVPT LSVSSMDDPD GLVSTDTNSD KETETVNVGT DINIPEQRES 840 SVTRMQNEKL GLNLLPRNDS SGHEVPILSV SSTDDLNSLI PTDTKSDKDT NSNVADSLGH 900 CPAQE

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence

MASDVPQDDV QCHFCGTYLR PRSFRKHQQR CKYNPDALTR ENLPASSIPA SATRATHSEM  60
ASDGPQENCQ CSFCHKDFEG RSSCAKHELQ CKNNPDVHSQ TEPSGNAQGG IGSLDVHVPR  120
RKRTARNQPL PEQHLKKPAS DYAQGGTSDA PETPPKPTTS EVKVDSAVNA PDITIPDNKD  180
PSVMQKQKKK LDLNLQPHSD SSDQEEQADN FSSINDLSTI GTNSDKKKNT ITGVADTNIP  240
DHKDPSRMQM QIKLDLNLPP HDDSFSSMDD LNALVPADTN SDKEKKTDNG GAPADANSDK  300
EKRTDNGSVP TGTNSIKEKK TDNGGVDINI PDHKDPSARQ VQKKLSLNLP PCNDSSSSMD  360
DLKTLAPTDT NSDKETNTSN GGVDTNIPDH SDPSAMQTKN KLDFNLPPRN DSSDSLPSKN  420
PLLLLFLSHH RIQKPPASTA RRRRRAMNLV RGRVQIRRMP RPIRARAPSP ALARSVHSTR  480
GVHRERLTSK KAEEERAGRV GINKKLDSSL LVKESLPTTT WTCTDLRWVQ DFRFLLVLGF  540
AVHEMASEWD SPCQFCGKNF KRRGNLLNHE LTCKYISDVH PQTESSGDAQ ARKDILGFHI  600
PRQKRTVPTF PASDYAQGGI NGATTSEAKV DRDPEEETDV LEALLLLREQ PAYPGEETFS  660
DGEPGAGNVD DEPAASNPDK VLTMCSDKGS SSPVECYGGD ERRVGARAIA GVEEDDLNPN  720
VGCRGVTDCV DESDVIQKQK RKPDLSVADL RDLVEMKQQN MKADTNIHDQ GHPSVMQMQK  780
NELGLDLLPH KNSSDHEVPT LSVSSMDDPD GLVSTDTNSD KETETVNVGT DINIPEQRES  840
SVTRMQNEKL GLNLLPRNDS SGHEVPILSV SSTDDLNSLI PTDTKSDKDT NSNVADSLGH  900
CPAQE

Link Out ? help Back to Top
Ensembl	OGLUM12G18470.1