PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G12510.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 881aa MW: 95765.6 Da PI: 7.9486

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G12510.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.6e-08	176	218	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E++ + +a +q G++ +++I +++ ++ q++++++ + OGLUM12G12510.2 176 AWTRQEEQNFFNALRQVGKN-FEKITLRVQ-SKSKDQVRHYYYRL 218 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence
MWQFAQFGLM RMRSSSPCGP SRRWSVATNR RWSSGDQHRL AFRCTACCCC RRRCTLATSV 60 TALLVTLAGA AGHAGEERDR SGTAAGNGVA VAAFSGPKCK NPAKIIVRPC CSASTPVSSP 120 RELAHPPPCA DLHRFRDFAS SGAVVRPAAS AASWFGGSTE PPMSLVRSAP ARQWAAWTRQ 180 EEQNFFNALR QVGKNFEKIT LRVQSKSKDQ VRHYYYRLVR RMKKLLGPEF SLDAKNSKDT 240 IAAMLCWWSL LEKFSCSASK LHLKPRRFKT FVEALGNQLL KDRNKTRKKC PRGDVCLSSS 300 SSAVNRTPGN ESFSVKLLAV DVSNGSKVGS SKGSFFKKVT EPNCSNKSGA TKGDLSATRT 360 VKQKRRAGGV VASAAYKKWE RAAMAGVSLV ADAAEELERN TVNADARMLS PSSSNACTVD 420 GLGTNHIKEA DQQAPAKLKL QLFPINEATR KALEKDEHNP HLELTLSARK KISSVLEHLN 480 RKWGNSNIAS GELLLFPYCA HQEDLATYQR WTTKDTVAVA DVFLSVNSPS VFRLRYGWFS 540 LAELEAGVSE ISLTHFENCL IPEDIHAKSP SEACVQKDGN SLSSCAPEQH PCGSKDQSAL 600 LLAMPSSTGK SAQVPEQCID VLPSQFGRQN QDQVTTNQVF EVDQGMDCAA VSEGEWADTL 660 TDISVGYLLT EASRGANTDC PGTSVVKNTL LLENPCSYDS FDAAVALHAS RYKSAEQPAL 720 ASHSTIWGAE ETCDAFSFNL PASRKREGSN NSASSSPDSD SDVHPSNSEG FQGFLQDLAG 780 AAVAHNPCID DAKDIESLCA ESPPRSDHDS APKDQSLADL YWPDSLGPLD LDIPSATYHA 840 DDLLLGDSQN SWNRMMANSL DAFRNLSFFT ADKNDSIPSI M

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence

MWQFAQFGLM RMRSSSPCGP SRRWSVATNR RWSSGDQHRL AFRCTACCCC RRRCTLATSV  60
TALLVTLAGA AGHAGEERDR SGTAAGNGVA VAAFSGPKCK NPAKIIVRPC CSASTPVSSP  120
RELAHPPPCA DLHRFRDFAS SGAVVRPAAS AASWFGGSTE PPMSLVRSAP ARQWAAWTRQ  180
EEQNFFNALR QVGKNFEKIT LRVQSKSKDQ VRHYYYRLVR RMKKLLGPEF SLDAKNSKDT  240
IAAMLCWWSL LEKFSCSASK LHLKPRRFKT FVEALGNQLL KDRNKTRKKC PRGDVCLSSS  300
SSAVNRTPGN ESFSVKLLAV DVSNGSKVGS SKGSFFKKVT EPNCSNKSGA TKGDLSATRT  360
VKQKRRAGGV VASAAYKKWE RAAMAGVSLV ADAAEELERN TVNADARMLS PSSSNACTVD  420
GLGTNHIKEA DQQAPAKLKL QLFPINEATR KALEKDEHNP HLELTLSARK KISSVLEHLN  480
RKWGNSNIAS GELLLFPYCA HQEDLATYQR WTTKDTVAVA DVFLSVNSPS VFRLRYGWFS  540
LAELEAGVSE ISLTHFENCL IPEDIHAKSP SEACVQKDGN SLSSCAPEQH PCGSKDQSAL  600
LLAMPSSTGK SAQVPEQCID VLPSQFGRQN QDQVTTNQVF EVDQGMDCAA VSEGEWADTL  660
TDISVGYLLT EASRGANTDC PGTSVVKNTL LLENPCSYDS FDAAVALHAS RYKSAEQPAL  720
ASHSTIWGAE ETCDAFSFNL PASRKREGSN NSASSSPDSD SDVHPSNSEG FQGFLQDLAG  780
AAVAHNPCID DAKDIESLCA ESPPRSDHDS APKDQSLADL YWPDSLGPLD LDIPSATYHA  840
DDLLLGDSQN SWNRMMANSL DAFRNLSFFT ADKNDSIPSI M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.2	1e-162	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G12510.2