PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G09810.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 527aa MW: 57078.9 Da PI: 6.5588

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G09810.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.2	6.6e-09	108	133	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ ++G C++G +CkF+H+ OGLUM12G09810.1 108 PGEPDCTYYVKFGSCRFGMKCKFNHP 133 5789*********************8 PP
2	zf-CCCH	25.9	1.8e-08	238	260	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G Ck+ H OGLUM12G09810.1 238 QEECKYYSTPGGCKFGKACKYLH 260 699******************** PP
3	zf-CCCH	34.6	3.3e-11	285	309	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Cky +CkF+H+ OGLUM12G09810.1 285 GEKECPYYMRTGSCKYATNCKFHHP 309 7899********************9 PP
4	zf-CCCH	19.9	1.3e-06	432	458	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ +Ck++H++ OGLUM12G09810.1 432 PGQPECQHFVKSGFCKFRMKCKYHHPR 458 5789*********************96 PP
5	zf-CCCH	23.7	8.3e-08	477	502	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ OGLUM12G09810.1 477 DQPVCTYYGRYGVCKFGPACAYNHPF 502 6899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL 60 PKPTGWEDGP VVAGDEVSGG EKLPGEVAAA VGVEGAAADS RPRFPRRPGE PDCTYYVKFG 120 SCRFGMKCKF NHPARKKKSR VKGSNGGSGS GGSNSSSNKA SSPDDEQAPK EEYGSYVPDI 180 SPEVDSLGFA DKGSASNLEN FKKYSYEIID VKKGRVEPKE LKVAKEKRKE FISEGSSQEE 240 CKYYSTPGGC KFGKACKYLH RDGKEGKTDA EKVDLNFLGL PLRPGEKECP YYMRTGSCKY 300 ATNCKFHHPD PSNVASKDPQ LEHENGDAPQ QDVQGSSSQP NASIWPDQRT VNEHHVPFIA 360 PSPSYSAGML PPQGMYPPPE WNGYHQVPLN PYYPPGVPFQ HFPAAPINHP MYKAPEIPGH 420 QQVPSEEYPE RPGQPECQHF VKSGFCKFRM KCKYHHPRSP VPPAGALSPL GLPIKPDQPV 480 CTYYGRYGVC KFGPACAYNH PFNFSPVPAA GPPLLPAQYP TPGNYTL

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL  60
PKPTGWEDGP VVAGDEVSGG EKLPGEVAAA VGVEGAAADS RPRFPRRPGE PDCTYYVKFG  120
SCRFGMKCKF NHPARKKKSR VKGSNGGSGS GGSNSSSNKA SSPDDEQAPK EEYGSYVPDI  180
SPEVDSLGFA DKGSASNLEN FKKYSYEIID VKKGRVEPKE LKVAKEKRKE FISEGSSQEE  240
CKYYSTPGGC KFGKACKYLH RDGKEGKTDA EKVDLNFLGL PLRPGEKECP YYMRTGSCKY  300
ATNCKFHHPD PSNVASKDPQ LEHENGDAPQ QDVQGSSSQP NASIWPDQRT VNEHHVPFIA  360
PSPSYSAGML PPQGMYPPPE WNGYHQVPLN PYYPPGVPFQ HFPAAPINHP MYKAPEIPGH  420
QQVPSEEYPE RPGQPECQHF VKSGFCKFRM KCKYHHPRSP VPPAGALSPL GLPIKPDQPV  480
CTYYGRYGVC KFGPACAYNH PFNFSPVPAA GPPLLPAQYP TPGNYTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-58	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G09810.1