PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G07580.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 212aa MW: 23301.6 Da PI: 4.4173

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G07580.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.1	4e-25	105	195	2	89
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYneYA+ +GF r+ +s++s +++ +++++fvCs+eg +++++ + + +++r+ra+ r gC+a+++v ++ +++w+v+kle+ HnH+l OGLUM12G07580.2 105 FYNEYARWLGFPFRVGRSRRSkGMEEVVIMKRFVCSREGAHKKKQPStsgEATSKRERASMREGCNAMMEVVRD-KDHWVVSKLEKAHNHSL 195 9*****************944567789*******9999888787888999***********999.9************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MEDDERGDGD ELIADYVDCL MSLDTNSRSC QNDALILEGA PDDVDDHAAA AAAAAAEQDV 60 MRDFAPADGD GDGDGDGDGD ADAENDPKEP VLGMTFESDE AAKMFYNEYA RWLGFPFRVG 120 RSRRSKGMEE VVIMKRFVCS REGAHKKKQP STSGEATSKR ERASMREGCN AMMEVVRDKD 180 HWVVSKLEKA HNHSLGIGTR YGCFFKFSPN AN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	5e-21	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G07580.2