PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G07580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 229aa MW: 25230.9 Da PI: 4.5906 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.8 | 4.8e-25 | 105 | 195 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYneYA+ +GF r+ +s++s +++ +++++fvCs+eg +++++ + + +++r+ra+ r gC+a+++v ++ +++w+v+kle+ HnH+l OGLUM12G07580.1 105 FYNEYARWLGFPFRVGRSRRSkGMEEVVIMKRFVCSREGAHKKKQPStsgEATSKRERASMREGCNAMMEVVRD-KDHWVVSKLEKAHNHSL 195 9*******************944567789***********9999888787888999***************999.9**************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MEDDERGDGD ELIADYVDCL MSLDTNSRSC QNDALILEGA PDDVDDHAAA AAAAAAEQDV 60 MRDFAPADGD GDGDGDGDGD ADAENDPKEP VLGMTFESDE AAKMFYNEYA RWLGFPFRVG 120 RSRRSKGMEE VVIMKRFVCS REGAHKKKQP STSGEATSKR ERASMREGCN AMMEVVRDKD 180 HWVVSKLEKA HNHSLGIGTR YGYLRARGLP DVFGIRSARC FFKFSPNAN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-20 | FAR1 family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM12G07580.1 |