PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM12G06360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 129aa MW: 13813.1 Da PI: 9.7917 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.2 | 6.5e-11 | 73 | 98 | 18 | 43 |
HHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 18 ngilKKAeELSvLCdaevaviifsst 43 ng+lKKA+ELSvL daev iifs++ OGLUM12G06360.1 73 NGLLKKAYELSVLYDAEVTPIIFSNR 98 8***********************86 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 129 aa Download sequence |
MTSPCSKSPW LPQLLPPATL PRQAQHAPWQ VRKPLVAPGK HRRPTPAACL ETVVLFDGPW 60 CAGTFAAAGN GVNGLLKKAY ELSVLYDAEV TPIIFSNRAM ASAMTNSESS NIITMVLREA 120 ATMVPKVSA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15800.2 | 8e-09 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM12G06360.1 |