PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G05330.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 378aa MW: 42897 Da PI: 5.9956

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G05330.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.9e-17	131	177	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +lv++v+q+G + W++I +++ gR +kqc++rw+++l OGLUM12G05330.1 131 KGHWTVEEDRKLVKLVEQFGLKKWSLIGGMLP-GRVGKQCRERWFNHL 177 789***************************.***********97 PP
2	Myb_DNA-binding	52.3	1.3e-16	183	225	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+ OGLUM12G05330.1 183 KDTWSEEEDMVLIQIHKEVGNR-WAEIAKRLP-GRTENSIKNHWN 225 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MDFSCFNPQP AISHGIPFDS FLLQDELHHH ADLDHPFEAE GITVHGSELE GGSVLPFATL 60 HDLDHEFFRR GSRKDFIDNA SSIFLLNPKT EVSHLVRDVQ VGAFGAYEMN GRLISRNKAS 120 RKGIKKADAV KGHWTVEEDR KLVKLVEQFG LKKWSLIGGM LPGRVGKQCR ERWFNHLRPN 180 IKKDTWSEEE DMVLIQIHKE VGNRWAEIAK RLPGRTENSI KNHWNATKRR QFARRRNRST 240 SKSGSTVLQN YIKSLAISPQ ESQMNNERSE SNPSDMMITQ GTPCCFDGNN CSQSHTSEEN 300 IVPSCGDFAA EMWSGLFDTK EDEEDEAQYL LYDMDTHVDM NCIFSNMDYG SNIEPGLASV 360 VKAECSAESW AVNLKETD

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MDFSCFNPQP AISHGIPFDS FLLQDELHHH ADLDHPFEAE GITVHGSELE GGSVLPFATL  60
HDLDHEFFRR GSRKDFIDNA SSIFLLNPKT EVSHLVRDVQ VGAFGAYEMN GRLISRNKAS  120
RKGIKKADAV KGHWTVEEDR KLVKLVEQFG LKKWSLIGGM LPGRVGKQCR ERWFNHLRPN  180
IKKDTWSEEE DMVLIQIHKE VGNRWAEIAK RLPGRTENSI KNHWNATKRR QFARRRNRST  240
SKSGSTVLQN YIKSLAISPQ ESQMNNERSE SNPSDMMITQ GTPCCFDGNN CSQSHTSEEN  300
IVPSCGDFAA EMWSGLFDTK EDEEDEAQYL LYDMDTHVDM NCIFSNMDYG SNIEPGLASV  360
VKAECSAESW AVNLKETD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	3e-64	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G05330.1