PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G04880.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 347aa    MW: 35582.2 Da    PI: 5.2459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G04880.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.5e-20163212255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae+Aa+a++ a+++++g
  OGLUM12G04880.1 163 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDGAALRFRG 212
                      8********.**********7.....337************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MCCTVDEVAD RGEQRRQHRR PLDADAGGDE AAVATTSSSL LAAPMLSRRR QAEEMAAMVS  60
ALASVVAGGG GGTSLPAKRP AEREPEDGAA VEGVWWSYRS ELAAAAAAPS PPAAAAAPFP  120
AGYVPSPGQH SPASAAAAAD EEELPSPSSA DSGGGGGGAA RKRYRGVRQR PWGKWAAEIR  180
DPHKAARVWL GTFDTAEDAA RAYDGAALRF RGSRAKLNFP EHATLPPPPP PAAHRCPPPP  240
RPDALLESQD LSPGAGGGDP YSQYARFLQG SGGDGGEPAA LPGGGASQRT PPATTLLYSF  300
GGEAASAAYL WQPESGGGGG MGWPATSPAA WSEYGLYPPP ERRDTDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166ARKRYRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-25ERF family protein