PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G04270.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

E2F/DP

Protein Properties

Length: 448aa MW: 48723.7 Da PI: 4.4092

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G04270.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	83.3	2e-26	132	197	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kfl+ll+ ++ giv+ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg OGLUM12G04270.1 132 RYDSSLGLLTKKFLNLLKGAPGGIVDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNNIRWKG 197 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MAAAGAGSSE VAARVLLQRY QPFAPPPGEY HQFGSGGAAA AAAGDMTEAV LIRTPLKRKH 60 DREENEAAES NDWMMSPGYT NPAGSPVPTP LSGKGSKAFA KSKAAKGQKS CPQTPLCASS 120 PGNPVTPVGG CRYDSSLGLL TKKFLNLLKG APGGIVDLNN AAETLEVQKR RIYDITNVLE 180 GIGLIEKKLK NNIRWKGIDD SRPGEVSDDM SILQADIEAL SLQEHSVDQQ ISEMRDKLRG 240 LTEDENNQKW LYVTEDDIKS LPCFQNQTLI AIKAPHGTTL EVPDPDEVND YPQRRYRIVL 300 RSTMGPIDVY LVSQFEEMSG METPPRTVQP VSMDSLENPR TPLAAEPNKA AESQPNIQDG 360 LLMPSDAPSS SQDIGGMMKI VPSELDTDAD YWLLSDAGVS ITDMWKTAPE VEWEGIEKFN 420 AEDFLEVSTP RQQDKPSSDI MDGDSCIS

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MAAAGAGSSE VAARVLLQRY QPFAPPPGEY HQFGSGGAAA AAAGDMTEAV LIRTPLKRKH  60
DREENEAAES NDWMMSPGYT NPAGSPVPTP LSGKGSKAFA KSKAAKGQKS CPQTPLCASS  120
PGNPVTPVGG CRYDSSLGLL TKKFLNLLKG APGGIVDLNN AAETLEVQKR RIYDITNVLE  180
GIGLIEKKLK NNIRWKGIDD SRPGEVSDDM SILQADIEAL SLQEHSVDQQ ISEMRDKLRG  240
LTEDENNQKW LYVTEDDIKS LPCFQNQTLI AIKAPHGTTL EVPDPDEVND YPQRRYRIVL  300
RSTMGPIDVY LVSQFEEMSG METPPRTVQP VSMDSLENPR TPLAAEPNKA AESQPNIQDG  360
LLMPSDAPSS SQDIGGMMKI VPSELDTDAD YWLLSDAGVS ITDMWKTAPE VEWEGIEKFN  420
AEDFLEVSTP RQQDKPSSDI MDGDSCIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	1e-108	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G04270.1