PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G04180.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 309aa MW: 34652.6 Da PI: 7.4709

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G04180.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	95.7	3.2e-30	36	129	1	88
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ OGLUM12G04180.2 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplggGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGlG 129 99**************************9555568889**********************************************876543 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLGGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV 120 HFERVRGLGA ADRLFIGCRR RGESASAPPP AVRVTPPPPA LNGGEQQPWS PMCYSTSGSS 180 YDPTSPANSY AYHRSVDQDH SDILHAGESQ RDADAKSSSA ASAPPPSRRL RLFGVNLDCG 240 PEPEADQATA MYGYMHHQSP YAAVSTVPNY WSGQLVDEMM RRSEAFACRI LTTNSETSYY 300 YHQPTTTTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	1e-52	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G04180.2