PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G02750.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 554aa    MW: 60838.8 Da    PI: 5.1852
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G02750.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.14.3e-1011675461373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+elL++cA+av+sg+ + a +lL++++ ++sp+gd+++Rla+yf+ +L+arla+   +l + l +s++++ +  e l a+++f  ++ +  ++
  OGLUM12G02750.1 167 LRELLMSCAQAVASGNRRSAGELLEQIKRHSSPTGDATERLAHYFADGLEARLAG-AASLEHRLLASAEERASAMELLEAYQVFMAACCFKWVA 259
                      689***************************************************9.88999999999999999********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      +  aN aIl+a+eg ++vHi+D++ + +GlQWp+Llq La+R++gpp++R+T vg+p++g   +++le+tg+rL++ A+++g+pf+f++++a r
  OGLUM12G02750.1 260 FTFANMAILRAAEGRSKVHIVDYGGQyHGLQWPSLLQRLAEREGGPPEVRMTLVGHPQPGfrPARRLERTGRRLSNCARAFGLPFKFRAVAAAR 353
                      ***********************86538*************************************************************9999* PP

             GRAS 186 ledleleeL.rvkpgE.alaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      +e+++ e+   v+p+E a++Vn vl+l +l+des+  ++  +rd+vL  +++++P v+v +  +  h+++ F +rf eal ++salfd+l+a+ 
  OGLUM12G02750.1 354 WETVTAEDVvGVDPDEaAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLDATT 447
                      *****9997589997736999*************98877779************************************************9998 PP

             GRAS 276 pres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                      p+e  + r+++Er +l+r++v v+a egaer+er et+++W++r ++aG+++v+++ ++++ +++ +r+ + +++ +ee+ g+l++gWk+r L+
  OGLUM12G02750.1 448 PEEGsHLRAVLERDVLRRAVVGVIAGEGAERVERPETYRRWQARNRRAGLRQVAVEADVVEAVRRRVRRRHHEEFVIEEDAGWLLQGWKGRILY 541
                      8876599****************************************************************999******************** PP

             GRAS 369 svSaW 373
                      + SaW
  OGLUM12G02750.1 542 AHSAW 546
                      ***** PP
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    
MGPAAPPSEA AAAADDVVLP YISRILMEED IDDMFFCLYP DHPALLEAQQ PFAQILLSSS  60
SGIAGELNSA PMEDSAALMM QGSGDGRGRM GSKHGGDELE AEVGRASKLM ATPEEEDDDD  120
DGVGEMLEKM MLNGDEEMNA PRVPAEKNGG KAARRKRRQG KGEVVDLREL LMSCAQAVAS  180
GNRRSAGELL EQIKRHSSPT GDATERLAHY FADGLEARLA GAASLEHRLL ASAEERASAM  240
ELLEAYQVFM AACCFKWVAF TFANMAILRA AEGRSKVHIV DYGGQYHGLQ WPSLLQRLAE  300
REGGPPEVRM TLVGHPQPGF RPARRLERTG RRLSNCARAF GLPFKFRAVA AARWETVTAE  360
DVVGVDPDEA AVVVNDVLSL GTLMDESGVF DDPSPRDTVL GSIRDMRPAV FVQAVVNGAH  420
GAPFFPTRFR EALFFFSALF DMLDATTPEE GSHLRAVLER DVLRRAVVGV IAGEGAERVE  480
RPETYRRWQA RNRRAGLRQV AVEADVVEAV RRRVRRRHHE EFVIEEDAGW LLQGWKGRIL  540
YAHSAWVVAE DGAH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-105GRAS family protein