PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM12G00790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 184aa MW: 20447.3 Da PI: 11.5296 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 87.7 | 2.6e-27 | 15 | 143 | 2 | 121 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec.eaesssssasnsssgka 90 ag kd+hsk+ T++g+RdRRvRls++ a+ f+d+qd+LG d++sk+ieWL++ ai++l ++ +++a + + ++++ s++++s+++a OGLUM12G00790.1 15 AGEKDKHSKVVTSRGLRDRRVRLSVPMAIAFYDIQDRLGIDQPSKAIEWLIR----AIDALLSLdcslVFPNAAQLlTRWRRRPSSGQPSEEQA 104 789************************************************7....78888888666644444444666666666666666644 PP TCP 91 aksaakskksqksaasalnlakesr........akarar 121 ++ +a+ s++++ +++ + ++ ak rar OGLUM12G00790.1 105 CTRKATVAASPRKSGEKRRKTRSGCaarraeriAKLRAR 143 444444444444443333333333311111112444444 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence |
MAAAWWTSRV ARVVAGEKDK HSKVVTSRGL RDRRVRLSVP MAIAFYDIQD RLGIDQPSKA 60 IEWLIRAIDA LLSLDCSLVF PNAAQLLTRW RRRPSSGQPS EEQACTRKAT VAASPRKSGE 120 KRRKTRSGCA ARRAERIAKL RARREGWMPR REASTSAASG GGSTGEIEED ELKHGGERSN 180 QVPI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30210.2 | 5e-25 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM12G00790.1 |