PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G00350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 158aa    MW: 17490.9 Da    PI: 6.6534
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G00350.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.55.6e-44111101100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +Ca+Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l ++p+ +r+da+sslvyeA+ar+rdPvyG+v+ i+ lqqq++ql+ +l
  OGLUM12G00350.1  11 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQQQVSQLQMQL 104
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      al+++e
  OGLUM12G00350.1 105 ALANAE 110
                      *99875 PP

Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MAGSGSGSGT PCASCKLLRR RCTSECVFAP YFPAEEAQRF AMVHRVFGAS NVSKMLLDVP  60
PPQRPDAVSS LVYEANARMR DPVYGCVAAI SFLQQQVSQL QMQLALANAE TAALQLQLQQ  120
QHQDQDDHQQ QPCILENAAA HHQLMLQEAF LKKESMWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.15e-44LBD family protein