PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G00350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 158aa MW: 17490.9 Da PI: 6.6534 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.5 | 5.6e-44 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l ++p+ +r+da+sslvyeA+ar+rdPvyG+v+ i+ lqqq++ql+ +l OGLUM12G00350.1 11 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQQQVSQLQMQL 104 7********************************************************************************************* PP DUF260 95 allkee 100 al+++e OGLUM12G00350.1 105 ALANAE 110 *99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence |
MAGSGSGSGT PCASCKLLRR RCTSECVFAP YFPAEEAQRF AMVHRVFGAS NVSKMLLDVP 60 PPQRPDAVSS LVYEANARMR DPVYGCVAAI SFLQQQVSQL QMQLALANAE TAALQLQLQQ 120 QHQDQDDHQQ QPCILENAAA HHQLMLQEAF LKKESMWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 5e-44 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM12G00350.1 |