PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G22870.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 885aa    MW: 98726.6 Da    PI: 4.9083
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G22870.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.38.8e-885068752373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      + lL++cA+a ++++++ a +lL++++++   +gd+mqR+a+yf+++L+arla+ +++ly+     ++ +++ +e l+++kl+  ++ + k++ 
  OGLUM11G22870.1 506 RLLLIQCAQATATDNQQSAGELLKKIKQHTLATGDAMQRVAHYFAKGLEARLAGRGKHLYQ-----NQMRMSLVEYLKVYKLYMAACCFTKVAL 594
                      568***************************************************9999994.....33446699******************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + a  +I++av+g++r+Hi+D++   Gl+Wp Ll+ L sR++gpp++RiT v+  ++     +++ee g+ L++ A+e++vpf+f++++a ++e
  OGLUM11G22870.1 595 MFAAMTIMQAVQGKKRLHIVDYGPRCGLHWPDLLRRLGSREDGPPEVRITIVDILQPAfrPFQRIEEAGHCLSSCANEFRVPFRFQAVAAAKWE 688
                      *****************************************************99998999**************************9999*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      ++  e+L+++p+E+l+Vn  l+   l+desv  +   +rd  L+ + +++P+v++    + ++ ++sFl rf   l yysalfd l+a+ pr+s
  OGLUM11G22870.1 689 TVGAEDLHIEPDEVLVVNDLLSFSALMDESVFCDGpnPRDVALRNISKMQPDVFIQGITNDNY-GASFLSRFRAVLLYYSALFDILDATTPRDS 781
                      ******************************98776669**********************999.789*************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                        r  +E+ llg+ + n++acega+ +er e++++W++r ++aG+++++l+ +++++++  ++k++ + + + e+ ++l++gW++r L++ SaW
  OGLUM11G22870.1 782 GLRLALEQNLLGPYALNAIACEGADLVERPEKYKQWQARNHRAGMQQLKLRPDIVDTIRDEVNKYHHKDFLLGEDGQWLLQGWMGRILFAHSAW 875
                      ******************************************************************888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    
MAAAPKPEEL VVAIEQPFSP SLFLDLPPTP HHDDDPNNVN DDLLLPFISR ILMEDDIDDK  60
FFYQFPDHPA LLQAQQSYAQ ILDAPATSSS SDDTTINNNT TNSTSVPDTL AMPDHDADTQ  120
SAPDDMEMLN IAFLKGREEA TKFLPTNNTL FSDLKAEPVL DIQPTFMFGP SDGGGGGRGR  180
KNRHAELEED DLETETSRSS KLMVPEQDDA AAADKIFDEI ILNGYQMIIK GIDELRVAMG  240
SQSQADKNGR RASRAKTAVV DLHTLLIHCA QAVATGDWRS ATELLKQIKQ NSMANPEDFF  300
WEALLKENEA PSPPPVFFDL PATPLSNSEG TDPSSLDNQL LSYVSRMLME DEMGSSAAIT  360
NLQCVNRGST EEANNMLPGS EVVRAFSKGM EEASKLLPRN NSFRTLETVD QVSSDGHCRG  420
RKKKNHDRDE QQLEEELGRS SKLAALTIAG TQEAGARELL DELMLHAHET CIKDMEKLRI  480
DMDNEAEKKI NKKDKKGSSS KVVDLRLLLI QCAQATATDN QQSAGELLKK IKQHTLATGD  540
AMQRVAHYFA KGLEARLAGR GKHLYQNQMR MSLVEYLKVY KLYMAACCFT KVALMFAAMT  600
IMQAVQGKKR LHIVDYGPRC GLHWPDLLRR LGSREDGPPE VRITIVDILQ PAFRPFQRIE  660
EAGHCLSSCA NEFRVPFRFQ AVAAAKWETV GAEDLHIEPD EVLVVNDLLS FSALMDESVF  720
CDGPNPRDVA LRNISKMQPD VFIQGITNDN YGASFLSRFR AVLLYYSALF DILDATTPRD  780
SGLRLALEQN LLGPYALNAI ACEGADLVER PEKYKQWQAR NHRAGMQQLK LRPDIVDTIR  840
DEVNKYHHKD FLLGEDGQWL LQGWMGRILF AHSAWVRQSQ DTSSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1492532KKDKKGSSSKVVDLRLLLIQCAQATATDNQQSAGELLKKIK
2528533LKKIKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.11e-109GRAS family protein