PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G22840.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 640aa    MW: 71842.1 Da    PI: 6.4784
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G22840.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.61e-1062626362373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lLl+cA+av+++d + a++lL ++++++s  gd+ qRla++f+++L+arla+++s++y++l +++ts   +++ l+a++l+ e++ + k+++
  OGLUM11G22840.1 262 HNLLLHCAQAVATDDRRSAHELLRQIKQHSSAWGDAGQRLAHCFAQGLEARLAGTGSQVYQSLMSQRTS---VVDFLKAYRLYMEACCCKKVAF 352
                      689************************************************************999999...********************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      +  N++I++av+g +++Hi+D+++s+G+QWp Ll++La+R++gpp++RiTg++ p++g    + +eetg+rL+++A+elgvpf+f+ ++a++ e
  OGLUM11G22840.1 353 VFSNKTIYDAVAGRRKLHIVDYGLSYGFQWPGLLRELAARRGGPPEVRITGIDLPQPGfrPDQHIEETGRRLSRYADELGVPFKFHGIAATKKE 446
                      *********************************************************9*99***************************999*** PP

             GRAS 188 dleleeLrvkp.gEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +++leeL   + +E+++V +  +  +++des++ +s   +rdevL  +++++P+v+++   +  ++++ Fl+rf eal+yy+a fd l+a+++r
  OGLUM11G22840.1 447 SVRLEELGEAEeDEVVVVISLCHFRNVMDESLQEDSsrsPRDEVLGNIRRMRPDVFIHGIMNGAYGATYFLTRFREALYYYAAQFDLLDATVGR 540
                      *******77766******************9988777779****************************************************** PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      es+er+ vEr ++gr++ nv+acegaer+er e +++W++r ++aG++++pl+ +++  +   +r  + + + v+e++ +l+  Wk+r L+++S
  OGLUM11G22840.1 541 ESHERMLVERDIFGRAALNVIACEGAERVERPEMYKQWQARNQRAGLRQLPLNPQVVRLVLDKVRDKYHKDFVVDEDQRWLLHRWKGRVLYALS 634
                      **************************************************************999999888*********************** PP

             GRAS 372 aW 373
                       W
  OGLUM11G22840.1 635 TW 636
                      ** PP
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    
MATTPEAEES LRFRWPAAEE EEFDNDMVLP YISRLLMEDD VHDHFFYQYP DHPALLRAQQ  60
PFAQILAASS SPSSAGGASS SSSSDAPPSR GFFDDEAATA KTTATFPTSA VHSVDHQYSG  120
GLDMVNMAFL KGMEEANKFL PTNTLLLSTD SSTTLQLQGQ GGHGMLGVGG AAHADADAAI  180
NSKKVNCRDD DLEAGTGRAA KLMAPEPERE EEGAREMFDE MMLQEHEICM KGVKQLSVKS  240
KSSSKKARGR RTVIHTEPVD LHNLLLHCAQ AVATDDRRSA HELLRQIKQH SSAWGDAGQR  300
LAHCFAQGLE ARLAGTGSQV YQSLMSQRTS VVDFLKAYRL YMEACCCKKV AFVFSNKTIY  360
DAVAGRRKLH IVDYGLSYGF QWPGLLRELA ARRGGPPEVR ITGIDLPQPG FRPDQHIEET  420
GRRLSRYADE LGVPFKFHGI AATKKESVRL EELGEAEEDE VVVVISLCHF RNVMDESLQE  480
DSSRSPRDEV LGNIRRMRPD VFIHGIMNGA YGATYFLTRF REALYYYAAQ FDLLDATVGR  540
ESHERMLVER DIFGRAALNV IACEGAERVE RPEMYKQWQA RNQRAGLRQL PLNPQVVRLV  600
LDKVRDKYHK DFVVDEDQRW LLHRWKGRVL YALSTWVAQH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-134GRAS family protein