PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G21110.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 386aa    MW: 42552.8 Da    PI: 6.7161
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G21110.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.46e-211053245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     + en+s r+vt+skRr gilKKA+ELS+LCd+   +++fs++gk
  OGLUM11G21110.1 10 KLENSSGRHVTYSKRRSGILKKAKELSILCDIPLILLMFSPNGK 53
                     679***************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MGRVKLKIKK LENSSGRHVT YSKRRSGILK KAKELSILCD IPLILLMFSP NGKPTICVGD  60
HSSIEDVITK YAQQTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGSG GQTVEELSSH  120
LGALQCQMAD VEKRLSYWSD PEKVDNIDHI RAMEQSLKES LNRIRIHKEN FAKQHLMSLQ  180
CAAAQFQNDM QLPLGLTGDP NTSSWFHGGG SAEAQQPMML PEDPSLLHQR DIGCSASTSL  240
QSYPGYFSMG KQSTDNAGGG EQHHHAAVQQ QQQPEFSQAD CLTSLQLGAQ FPYPSAFDNA  300
GLLSDRLFDN AAAAAAAAMD FGGHYDLPRP GDEASFQNWA SAACGATMYD HQQQQQQQQQ  360
PAQLPAAATV EAPSFNHPSP HRQLMI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-85M-type_MADS family protein