PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G09770.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 590aa    MW: 63148.5 Da    PI: 6.3928
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G09770.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.5e-11175231155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OGLUM11G09770.1 175 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 231
                      57*******************4444.2455535555.779999**************98 PP
2AP251.13.3e-16274325155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  OGLUM11G09770.1 274 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 325
                      57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    
MASITNWLGF SSSFSGAGAD PVLPHPPLQG KTSHLMHQWG SAYEGGGTVA AAGGEETAAP  60
KLEDFLGMQG QQETAAAAAG HGRGGSSSVV GLSMIKNWLR SQPPPAVVGG EDAMMALAVS  120
TSASPPVDAT APACISPDGM GSKAADGGGA AEAAAAAAAA QRMKAAMDTF GQRTSIYRGV  180
TKHRWTGRYE AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR AYDLAALKYW GTTTTTNFPV  240
SNYEKELDEM KHMNRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD  300
LYLGTFGTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SIIESSNLPI GTGTTRGIKD  360
SSDHTDNVMD INVNTEPNNV VSSHFTNGVG NYGSQHYGYN GWSPISMQPI PSQYANGQPR  420
AWLKQEQDSS VVTAAQNLHN LHHFSSLGYT HNFFQQSDVP DVTGLVDAPS RSSDSYSFRY  480
NGTNGFHGLP GGISYAMPVA TAVDQGQGIH GYGEDGVAGI DTTHDLYGSR NVYYLSEGSL  540
VADVEKEGDY GQSVGGNSWV LPTPESEMVE KADNVTVCHG MPLFSVWNDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-115AP2 family protein