PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G07850.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 334aa    MW: 34628.6 Da    PI: 8.3485
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G07850.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.61.1e-3193147358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e +
  OGLUM11G07850.1  93 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEAD 147
                      689*************************9.999********************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MDLSGAQGEL PIPMHASAAA SPFAGMGAHG GAGGGYVVEL HHHHEHVGNN GQAMAMASPP  60
PTNVAVAAEQ EGSPVAGKKR GGMAVVGGGG GVAVKYRECL KNHAAAIGGN ATDGCGEFMP  120
SGEEGSLEAL KCSACGCHRN FHRKEADDLD ADSCAAALRA AAGRHHHLLG PALPHHHHKN  180
GGGLLVAGGX XYGAAYAAAR ALPPPPPPPP HGHHHHHQII MPLNMIHTSE SDEMDVSGGG  240
GGGGRGGGSS SSSKKRFRTK FTAEQKARML EFAERVGWRL QKLDDAMVHH FCQEIGVKRR  300
VLKHAVGDVT VAFMSDHLTS KIKGVKTEEI KKGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.13e-27ZF-HD family protein