PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G02280.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 320aa    MW: 35108.9 Da    PI: 5.7605
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G02280.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS188.93.5e-58331847289
             GRAS  47 eALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpe 137
                        La+rl+r v+ + +al  ps     +  ++ aa++ f+e+sP++k+++++ N+aI+eave+e+ vH++ ++   +q+ QW+ Ll++L  Rpe
  OGLUM11G02280.1   3 DCLARRLLRPVQAITDALiDPSVYL--DRRSVRAARRGFFELSPFPKVAFVVGNRAIVEAVENESLVHVVGMSgpFTQPCQWIQLLHELRRRPE 94 
                      6799999999999999885444443..34555578899**********************************86679****************9 PP

             GRAS 138 gpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll............ 214
                      gpp  +R+T+v++    + e l +++e  ++ Aeelg++f+f+  v+ +ledl++++L    ++k+gEal+V++ lqlhrll            
  OGLUM11G02280.1  95 GPPrVVRLTVVHD----DGELLAKMEELVSDEAEELGMEFQFHG-VVGQLEDLDFSNLrnvlEIKSGEALVVSCTLQLHRLLaadddamyssrs 183
                      988789*******....***************************.7999****9999866667889**************************** PP

             GRAS 215 ........................................................desvsleserdevLklvkslsPkvvvvveqeadhnses 252
                                                                              + +++l     ++L++v+ lsPk++vv+eq+adhn+ s
  OGLUM11G02280.1 184 ahlnqmasiaqlqhmavnscpsssgggsvqykdddpyrspatpltfvsppvstphfQTPAAL----ASFLSAVRALSPKILVVAEQDADHNGVS 273
                      *************************************************9986555555555....55************************** PP

             GRAS 253 Flerflealeyysalfdsleaklpres........eerikvErel 289
                      F +rf+eal++y+a+fdsl+a ++++s        +er+ vEr++
  OGLUM11G02280.1 274 FRKRFCEALHHYAAVFDSLDAAAATTSaasrlwspDERAQVERVV 318
                      *******************99988888655556666666666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MVDCLARRLL RPVQAITDAL IDPSVYLDRR SVRAARRGFF ELSPFPKVAF VVGNRAIVEA  60
VENESLVHVV GMSGPFTQPC QWIQLLHELR RRPEGPPRVV RLTVVHDDGE LLAKMEELVS  120
DEAEELGMEF QFHGVVGQLE DLDFSNLRNV LEIKSGEALV VSCTLQLHRL LAADDDAMYS  180
SRSAHLNQMA SIAQLQHMAV NSCPSSSGGG SVQYKDDDPY RSPATPLTFV SPPVSTPHFQ  240
TPAALASFLS AVRALSPKIL VVAEQDADHN GVSFRKRFCE ALHHYAAVFD SLDAAAATTS  300
AASRLWSPDE RAQVERVVVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-38GRAS family protein