PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G02230.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 624aa    MW: 69707.7 Da    PI: 6.5993
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G02230.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2401e-73204152349
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      v lL ecA +v++g++e+a+   ++++ l   ++ p+qRl + ++  La+rl++s ++l  al  ps+    + s+  aa++ f+++ P+l  +
  OGLUM11G02230.1  20 VPLLHECASHVTEGSFEKADFSFKKIRMLT-IADGPLQRLSTIIVDSLAHRLLSSIQGLPGALiDPSDYF--EKSTLRAARHNFFKLNPYLSTG 110
                      6789**********************9876.5667*******************9999998874444443..35555567778*********** PP

             GRAS  95 hltaNqaIleavege....ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                      ++t N aI+ea+e e    + vHi+D++ s  ++ QW+ Ll+ +  Rp+g+p+l +T++++    +++ l  +++ L+k Ae+lgv+f+f   v
  OGLUM11G02230.1 111 FVTNNWAIMEAMEDEkvdfQVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSLLSKKAESLGVSFHFIS-V 199
                      **************9999899******8653389***************************....9**************************.7 PP

             GRAS 183 akrledleleeLrvkp....gEalaVnlvlqlhrll.........................................desvsleserdevLklv 231
                        rle+l++++Lr       g a+a++++lq+hrll                                           s  +++   ++L+++
  OGLUM11G02230.1 200 IGRLETLDFSNLRSTFqikfGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAI 293
                      99**********54444555*******************************************************98666777778899***** PP

             GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                      + l+P+++ ++eq+adhn+  F +rf e l+yy+alfd+++a ++++    +er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+
  OGLUM11G02230.1 294 RALKPNIMLIMEQDADHNTLLFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEES 387
                      ****************************************77654444456******************************************* PP

             GRAS 323 GFkpvplsekaakqaklllrkvk.sdgy 349
                      GF++v+ls +a  ++ l +r  +    y
  OGLUM11G02230.1 388 GFHNVQLSFSAIREVGLSVRGNYrAADY 415
                      ************9999999988755445 PP
2GRAS70.53.2e-224785862110
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      + lL++cA  vs+g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++  ++l++al +s++s +    +  a++  ++v P+lk++
  OGLUM11G02230.1 478 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLKLA 570
                      679*******************************9*****************************888887544.44446778899********* PP

             GRAS  95 hltaNqaIleavegee 110
                      +lt+N+aIlea+ege+
  OGLUM11G02230.1 571 YLTTNHAILEAMEGES 586
                      *************984 PP
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    
MMHGLWVQDQ GVVDHLAQLV PLLHECASHV TEGSFEKADF SFKKIRMLTI ADGPLQRLST  60
IIVDSLAHRL LSSIQGLPGA LIDPSDYFEK STLRAARHNF FKLNPYLSTG FVTNNWAIME  120
AMEDEKVDFQ VVHIVDLSCS AAHPWQWLKL LDDFHGRPGG APELYLTVLH DDNDFLADMQ  180
SLLSKKAESL GVSFHFISVI GRLETLDFSN LRSTFQIKFG VAVAISCALQ MHRLLLVDDN  240
LSSTSIAQLQ KMANFTQPKQ MASSVCSPAS TLNYLQTPSP RTPKLLARLL SAIRALKPNI  300
MLIMEQDADH NTLLFRDRFN EVLNYYAALF DCFHAVAAAN PGRTDERLRV ERMILREEIK  360
NILVCEGVHR HERHERLDQW AMHMEESGFH NVQLSFSAIR EVGLSVRGNY RAADYIQISH  420
SGCSVQHMSG SSRGMFQDDM LSSATSSPAS SVYSPSPSPS NGSWVQELSH DQQSVRLIGL  480
LYQCAAEVSA GSFDRANLCL EHITQLASLD APHALQRLAA VFADALARKL LNLIPGLSRA  540
LLSSANSADA HLVPVARRHM FDVLPFLKLA YLTTNHAILE AMEGESYENY LFLYIDLNLK  600
IANSMYAGNT LTTVEVYRRP TAFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-62GRAS family protein