PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G01480.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 216aa    MW: 24140.8 Da    PI: 10.4983
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G01480.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.1e-1378135155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++   ++ k+ + g ++++e Aa+a++ a++k++g
  OGLUM11G01480.1  78 SIYRGVTRHRWTGRFEAHLWDkNCSTSlQNkKKGRQGAYDSEEAAARAYDLAALKYWG 135
                      57*****************99554433744577777********************98 PP
2AP229.91.3e-09178212138
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                      s+y+GV +++ +grW+A+I  +     +k+ +lg+fg 
  OGLUM11G01480.1 178 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFGC 212
                      89****99**********988422...5*********7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MAKRSSPDPA SSSPSASSSP SSPSSSSSED SSSPMSMPCK RRARPRTDKS TGKAKRPKKE  60
SKEVVDPSSN GGGGKRSSIY RGVTRHRWTG RFEAHLWDKN CSTSLQNKKK GRQGAYDSEE  120
AAARAYDLAA LKYWGPETVL NFPLEEYEKE RSEMEGVSRE EYLASLRRRS SGFSRGVSKY  180
RGVARHHHNG RWEARIGRVL GNKYLYLGTF GCYFEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.12e-57AP2 family protein