PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G01180.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 321aa    MW: 34970.9 Da    PI: 7.0181
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G01180.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.66e-108131449374
             GRAS  49 Laarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpps 141
                      ++arl++s+ +ly+ l +ps+++ + + +++aa+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp+
  OGLUM11G01180.1   1 MSARLVSSCLGLYAPLpNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPR 94 
                      5799************777777777799999*************************************************************** PP

             GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                      +R+Tg+g+    s e+le+tg+rL++fA++lg+pfef + va++  +l++e+L v ++Ea+aV++    h+l+d ++s ++    +L+l+++l 
  OGLUM11G01180.1  95 VRLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN----TLWLIQRLA 177
                      ********....***************************.7************************99..999999999999....********* PP

             GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                      Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r+ + + +++Wre+l ++GF+  +l
  OGLUM11G01180.1 178 PKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSL 269
                      *************.899****************************************************999987.****************** PP

             GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        +aa+qa lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  OGLUM11G01180.1 270 AGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 314
                      ********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MSARLVSSCL GLYAPLPNPS PAAARLHGRV AAAFQVFNGI SPFVKFSHFT ANQAIQEAFE  60
REERVHIIDL DIMQGLQWPG LFHILASRPG GPPRVRLTGL GASMEALEAT GKRLSDFADT  120
LGLPFEFCPV ADKAGNLDPE KLGVTRREAV AVHWLRHSLY DVTGSDSNTL WLIQRLAPKV  180
VTMVEQDLSH SGSFLARFVE AIHYYSALFD SLDASYSEDS PERHVVEQQL LSREIRNVLA  240
VGGPARTGDV KFGSWREKLA QSGFRVSSLA GSAAAQAALL LGMFPSDGYT LIEENGALKL  300
GWKDLCLLTA SAWRPIQASG R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-172GRAS family protein