PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G18570.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 289aa    MW: 29730.8 Da    PI: 4.4779
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G18570.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1794144155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ta++Aa+a++ a+++++g
  OGLUM10G18570.1  94 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTADMAARAHDVAALAIKG 144
                      68*****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MAMAKELQET SSSSSSSAAS TSSCSSAVTD AWSSPARPNA VAGGKRKKEV VGEADEAAGG  60
GAGEEEEEEA EAAAAGKSSA ATKKRKRSSD GKHPVYRGVR MRAWGKWVSE IREPRKKSRI  120
WLGTFPTADM AARAHDVAAL AIKGRAAHLN FPDLAGVLPR AASASPKDVQ AAAALAAAFT  180
TSPSSSPSSS SSADDVAPCV VHADADEQPA AAAKNDDDDG STTAPVAAAA AAAVADEQQL  240
FDLPDLLFDI QDGPFGFPAM WAPLADVDEV NAELRLEEPL LWDLGVTDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14586KRKKEVVGEADEAAGGGAGEEEEEEAEAAAAGKSSAATKKRK
28388KKRKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-31ERF family protein