PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G11120.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 346aa    MW: 36877.1 Da    PI: 6.413
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G11120.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.83.2e-2794180371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  OGLUM10G11120.1  94 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnfaspdpdnpntpqfDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 180
                      689*******...*****999************************************************************.*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MVSGAAHSAS TSGGGGGSEG SPTGRAAPGM QGGGSAATPA ASASASTPAS ETTVARRLDG  60
LDIQGDDAPS SQPATSKKKK RGPGTRATGP DKGGRGLRQF SMKVCEKVES KGRTTYNEVA  120
DELVAEFADP NNNFASPDPD NPNTPQFDEK NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG  180
LPRTSMSDVE ELKTEIIGLK GRIDKKNAYL QELEDQFVGL QNLAQRNEQL YGSGNAPSGG  240
VALPFILVQT RPHATVEVEI SEDMQLVHFD FNSTPFELHD DSFVLKALGF SGKEPDDTQA  300
RVGNGGECST TPIYHQSPQV ARPNGVRLPT SPPIPGILKG RVKHEH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-132E2F/DP family protein