PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G09180.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 334aa    MW: 35124.1 Da    PI: 6.4281
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G09180.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-19108161356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eq+++Le+ Fe+ +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  OGLUM10G09180.2 108 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 161
                      456899***********************************************9 PP
2HD-ZIP_I/II127.94.2e-41107198192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrls eqv++LE+sFe+ +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkd++aL+r++da ++en++L + +++L++e+ 
  OGLUM10G09180.2 107 EKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIV 198
                      69**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MRPAMASNGA AAGAMAPFFP PNFLLQMQQP LPLHHQHLQD HAHGGHGGHH LLPPPPPSLS  60
PFLPDLAMDA PPPPMYEASG GDGGGGGAAS EDEEDGCGGG GGGGGGEKKR RLSVEQVRTL  120
ERSFESGNKL EPERKAQLAR ALGLQPRQVA IWFQNRRARW KTKQLEKDFD ALRRQLDAAR  180
AENDALLSLN SKLHAEIVAL KGGAAAAGGG GSSCRQEAAS ELINLNVKET EASCSNRSEN  240
SSEINLDISR PAPPPPPPPA NESPVNRGIP FYASIGRGGA GGVDIDQLLS CPRRAAACSR  300
RPRRATVPAA PPEMRGEESE GEGSEGERGE GEDK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156164RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-46HD-ZIP family protein