PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G08810.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YA

Protein Properties

Length: 166aa MW: 18332.8 Da PI: 10.351

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G08810.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	75.7	9.1e-24	67	123	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++I++RRq+R+ + +e+k+ ++ rk++l e+R+k+A+ R+Rg+gGrF OGLUM10G08810.2 67 DEPIYVNAKQYHAIIRRRQRRKIVGSEDKV-AAIRKRILVEARQKQAKLRRRGKGGRF 123 79**************************.************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence
MGFGESTQGN QRKLDGPGKV STELSLVNLE AKNLHPKPEC NQPLEHIPTK GMKCTPLLPL 60 PTEHADDEPI YVNAKQYHAI IRRRQRRKIV GSEDKVAAIR KRILVEARQK QAKLRRRGKG 120 GRFISIEHPL ELSMDDQISK NGGSASPSSS TVSENSSNVN GFTGDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	1e-17	NF-YA family protein

Link Out ? help Back to Top
Ensembl	OGLUM10G08810.2