PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G07400.5
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 530aa    MW: 58825.4 Da    PI: 6.1054
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G07400.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.91.2e-1321605291373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++++++c +av+++d +l++ l+++l +++s +gdp+qRl ay++e+L arl++s+s++yk+l+++e +   sse +++++l++e++P++kf+
  OGLUM10G07400.5 160 LKQVIIACGKAVAENDVRLTELLISELGQMVSVSGDPLQRLGAYMLEGLVARLSSSGSKIYKSLKCKEPT---SSELMSYMHLLYEICPFFKFG 250
                      57899****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp lRiTg+++++s   +   l  +g rL k+A+++g+pfefn+ v  + 
  OGLUM10G07400.5 251 YMSANGAIAEAIKGENFVHIIDFQIAQGSQWMTLIQALAARPGGPPFLRITGIDDSNSAyaRGGGLDIVGMRLYKVAQSFGLPFEFNA-VPAAS 343
                      *******************************************************988899999************************.79999 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++ le+L+++ gE+++Vn+++qlh+++desvs+e++rd++L++vkslsP++v++veqe+++n+ +F+ r le+l+yy+a+f+s+++ lpr+++
  OGLUM10G07400.5 344 HEVYLEHLDIRVGEVIVVNFAYQLHHTPDESVSTENHRDRILRMVKSLSPRLVTLVEQESNTNTRPFFPRYLETLDYYTAMFESIDVALPRDDK 437
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r++ E+++++r+ivn++acegaer+erhe ++kW++rl++aGF+p+pls+ +++++k+ll++++s  yr+ee++g l+lgWk+r Lv+ SaW
  OGLUM10G07400.5 438 RRMSAEQHCVARDIVNLIACEGAERVERHEVFGKWKARLTMAGFRPYPLSSVVNSTIKTLLHTYNSF-YRLEERDGVLYLGWKNRVLVVSSAW 529
                      *****************************************************************65.************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    
MRDDSQMPYY NNSVPSGGNG RFYITQNHQD AHYASSDDGS QKIGSSPQAF EAPYCTLESS  60
SANGAHPAHS SASSHSISPI SGSPLSHHDS HSDHTYNSPP SASCVTEITD LQIKLRELEN  120
AILGPELDIA YDSPESALQP NIMATPENWR QLLGINTGDL KQVIIACGKA VAENDVRLTE  180
LLISELGQMV SVSGDPLQRL GAYMLEGLVA RLSSSGSKIY KSLKCKEPTS SELMSYMHLL  240
YEICPFFKFG YMSANGAIAE AIKGENFVHI IDFQIAQGSQ WMTLIQALAA RPGGPPFLRI  300
TGIDDSNSAY ARGGGLDIVG MRLYKVAQSF GLPFEFNAVP AASHEVYLEH LDIRVGEVIV  360
VNFAYQLHHT PDESVSTENH RDRILRMVKS LSPRLVTLVE QESNTNTRPF FPRYLETLDY  420
YTAMFESIDV ALPRDDKRRM SAEQHCVARD IVNLIACEGA ERVERHEVFG KWKARLTMAG  480
FRPYPLSSVV NSTIKTLLHT YNSFYRLEER DGVLYLGWKN RVLVVSSAWC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein