PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G03230.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 269aa MW: 27974.1 Da PI: 6.9166

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G03230.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.7	1.1e-39	33	133	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++apyf +e +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lq+q++ l++e OGLUM10G03230.1 33 PCGACKFLRRKCVQGCIFAPYFDSEAgAAHFAAVHKVFGASNVSKLLQQIPAHRRLDAVVTICYEAQARLRDPVYGCVAHIFHLQHQVAGLQSE 126 7*******************998879************************************************************** PP DUF260 94 lallkee 100 l++l+ + OGLUM10G03230.1 127 LNYLQGH 133 99865 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MSSSVVVSAS GSGSGGGGGG GGGGAGGGGG GGPCGACKFL RRKCVQGCIF APYFDSEAGA 60 AHFAAVHKVF GASNVSKLLQ QIPAHRRLDA VVTICYEAQA RLRDPVYGCV AHIFHLQHQV 120 AGLQSELNYL QGHLSTMELP SPPPYVAGPT LAPPQPQPLM PMTAAANFNF SDLPSSSAAN 180 IPVTADLSTL FDPLPAAQPQ WGLYQQQQHH HQQLHHHPYD RMGDGSSSSR GGDDDGSDGG 240 DLQALARELL DRHGRSSSSS KLEPPPHTQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	3e-58	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM10G03230.1