PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G20790.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 167aa    MW: 18208.2 Da    PI: 4.7611
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G20790.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB54.43.1e-1734129695
            NF-YB   6 rflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                      ++lP a v r++k+ l + a       + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r+ 
  OGLUM09G20790.1  34 EELPKAIVRRLVKEKLAQVAAggaeviVNKDAMSAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFRNK 127
                      679**********99976543222333899**************************************************************97 PP

            NF-YB  94 eg 95 
                      ++
  OGLUM09G20790.1 128 NA 129
                      76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MAGETGEGGG SHSQPEKQPG QAAAAASMAE AEVEELPKAI VRRLVKEKLA QVAAGGAEVI  60
VNKDAMSAFA ESARIFIHYL SATANDMCKE SKRQTINADD VLKALDEMEF PEFVEPLNTS  120
LQEFRNKNAA RRSETTQKKA EKRRKTDKES LPQEQNDAAD NGKTDED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-35NF-YB family protein