PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G19470.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 369aa MW: 40400.4 Da PI: 4.848

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G19470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.1	2e-54	118	247	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v OGLUM09G19470.1 118 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRV 210 79**************************.99**********84335556888******************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+++g+kktLv+y+grap+g++tdWvmheyrl OGLUM09G19470.1 211 VHQhGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 247 99978899*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MEKVQASCEG DQGICKRGAK GGHPIDQNLV GGMTMSTGVP TTVPPTPALA ALKNLLIRVV 60 AAAAGKGLSS SAEEARCLWA KLPAPEEEEE EAGQQPEIRP PSSYRRPPTP TLMAPVGLPP 120 GFRFHPTDEE LVNYYLKRKI HGLKIELDII PEVDLYKCEP WELAEKSFLP SRDPEWYFFG 180 PRDRKYPNGF RTNRATRAGY WKSTGKDRRV VHQHGGRAIG MKKTLVYYRG RAPQGVRTDW 240 VMHEYRLDDK DCEDTMPIQD TYALCRVFKK NAICTEVELQ GQCSMALLEG ACQQLLASGG 300 GGSQEQYETP SPPDVPVGST SGGADADAEA EDDPDKDDSW MQFISDDAWC SSTADGGAEE 360 STSCVALAG

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MEKVQASCEG DQGICKRGAK GGHPIDQNLV GGMTMSTGVP TTVPPTPALA ALKNLLIRVV  60
AAAAGKGLSS SAEEARCLWA KLPAPEEEEE EAGQQPEIRP PSSYRRPPTP TLMAPVGLPP  120
GFRFHPTDEE LVNYYLKRKI HGLKIELDII PEVDLYKCEP WELAEKSFLP SRDPEWYFFG  180
PRDRKYPNGF RTNRATRAGY WKSTGKDRRV VHQHGGRAIG MKKTLVYYRG RAPQGVRTDW  240
VMHEYRLDDK DCEDTMPIQD TYALCRVFKK NAICTEVELQ GQCSMALLEG ACQQLLASGG  300
GGSQEQYETP SPPDVPVGST SGGADADAEA EDDPDKDDSW MQFISDDAWC SSTADGGAEE  360
STSCVALAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-115	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G19470.1