PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G19240.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 841aa MW: 92487.8 Da PI: 6.622

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G19240.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.5e-29	527	577	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OGLUM09G19240.2 527 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 577 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence
MEEGDPQPSI SLARTPSEGA AAAVDLDLLE QLLSADNAWL EVAANTSRSP NFFATPSNCL 60 TDASVATTTP ANSWWIQPSG ASTSVRERFD QALAYIRETQ SDANVLVQLW VPVKGNDGQL 120 VLTTSGQPFT LDQRSNSLIQ FREVSTKYQF SADVASGSSP GLPGRVFIGR LPEWSPDVRY 180 FTSYEYPRIS HAQYLDVHGT MGLPVFERGN SSCLGVIELI MTKQKLNFTS ELNTICSALQ 240 AVNLTSTEVS SIPRTKLNSA SYKDALPEIL EVLRAACITH KLPLAQTWVT CAQQGKRGSR 300 HSDENYKYCI STIDAACYVN EPQMQSFHEA CSEHHLLQGQ GVAGKAFTTN QPCFLPDIGS 360 STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GIADFVLEFF LPTDCEVLEE QKAVLDSLSG 420 TMRSVCQTLR VVTDKEMEDE AMREMNELNS FSPQGKNKVE ELSFGDNTRE DREETSWTTL 480 VGTSQKGSDL AELHTHGMLS HGGQGSSQAG DQTSKEGSKV KRRTKTEKTV SLQVLRQYFA 540 GSLKDAAKSL GVCPTTLKRI CRQHGINRWP SRKIKKVDHS LRKLQQIIDS VHGAETAFQL 600 NTLYKDLTNT SVSSDNNLSG SVTVPLANQN NLDFEKHQHH RLSSNIPSTS LSHSSCSQSS 660 DSSPSCSGGA TKHSPQVGAD QVRLGCLPQH SPVQTLHTEA ASINEHFSGQ EAPIDLLQDV 720 AEKANGEQHM SQSPSSPKQT ANVGMRVKVT FGSEKVRFRL KPECDFQELK QEISKRLSIV 780 DMNSLIVKYL DDDSEWVLMT CDADLHECFH VYKLADIQTI KISVHLAASP TRITIGHTGF 840 S

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence

MEEGDPQPSI SLARTPSEGA AAAVDLDLLE QLLSADNAWL EVAANTSRSP NFFATPSNCL  60
TDASVATTTP ANSWWIQPSG ASTSVRERFD QALAYIRETQ SDANVLVQLW VPVKGNDGQL  120
VLTTSGQPFT LDQRSNSLIQ FREVSTKYQF SADVASGSSP GLPGRVFIGR LPEWSPDVRY  180
FTSYEYPRIS HAQYLDVHGT MGLPVFERGN SSCLGVIELI MTKQKLNFTS ELNTICSALQ  240
AVNLTSTEVS SIPRTKLNSA SYKDALPEIL EVLRAACITH KLPLAQTWVT CAQQGKRGSR  300
HSDENYKYCI STIDAACYVN EPQMQSFHEA CSEHHLLQGQ GVAGKAFTTN QPCFLPDIGS  360
STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GIADFVLEFF LPTDCEVLEE QKAVLDSLSG  420
TMRSVCQTLR VVTDKEMEDE AMREMNELNS FSPQGKNKVE ELSFGDNTRE DREETSWTTL  480
VGTSQKGSDL AELHTHGMLS HGGQGSSQAG DQTSKEGSKV KRRTKTEKTV SLQVLRQYFA  540
GSLKDAAKSL GVCPTTLKRI CRQHGINRWP SRKIKKVDHS LRKLQQIIDS VHGAETAFQL  600
NTLYKDLTNT SVSSDNNLSG SVTVPLANQN NLDFEKHQHH RLSSNIPSTS LSHSSCSQSS  660
DSSPSCSGGA TKHSPQVGAD QVRLGCLPQH SPVQTLHTEA ASINEHFSGQ EAPIDLLQDV  720
AEKANGEQHM SQSPSSPKQT ANVGMRVKVT FGSEKVRFRL KPECDFQELK QEISKRLSIV  780
DMNSLIVKYL DDDSEWVLMT CDADLHECFH VYKLADIQTI KISVHLAASP TRITIGHTGF  840
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G19240.2