PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G19240.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 888aa MW: 97379.5 Da PI: 6.6782

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G19240.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.9e-29	574	624	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OGLUM09G19240.1 574 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 624 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence
MMCSSLLPTP CNPNAGKSST KFIPGLPVSC TPLAQDVQRN SEGNLTCMEE GDPQPSISLA 60 RTPSEGAAAA VDLDLLEQLL SADNAWLEVA ANTSRSPNFF ATPSNCLTDA SVATTTPANS 120 WWIQPSGAST SVRERFDQAL AYIRETQSDA NVLVQLWVPV KGNDGQLVLT TSGQPFTLDQ 180 RSNSLIQFRE VSTKYQFSAD VASGSSPGLP GRVFIGRLPE WSPDVRYFTS YEYPRISHAQ 240 YLDVHGTMGL PVFERGNSSC LGVIELIMTK QKLNFTSELN TICSALQAVN LTSTEVSSIP 300 RTKLNSASYK DALPEILEVL RAACITHKLP LAQTWVTCAQ QGKRGSRHSD ENYKYCISTI 360 DAACYVNEPQ MQSFHEACSE HHLLQGQGVA GKAFTTNQPC FLPDIGSSTK LEYPLSHHAK 420 IFNLKGAVAI RLRCTRTGIA DFVLEFFLPT DCEVLEEQKA VLDSLSGTMR SVCQTLRVVT 480 DKEMEDEAMR EMNELNSFSP QGKNKVEELS FGDNTREDRE ETSWTTLVGT SQKGSDLAEL 540 HTHGMLSHGG QGSSQAGDQT SKEGSKVKRR TKTEKTVSLQ VLRQYFAGSL KDAAKSLGVC 600 PTTLKRICRQ HGINRWPSRK IKKVDHSLRK LQQIIDSVHG AETAFQLNTL YKDLTNTSVS 660 SDNNLSGSVT VPLANQNNLD FEKHQHHRLS SNIPSTSLSH SSCSQSSDSS PSCSGGATKH 720 SPQVGADQVR LGCLPQHSPV QTLHTEAASI NEHFSGQEAP IDLLQDVAEK ANGEQHMSQS 780 PSSPKQTANV GMRVKVTFGS EKVRFRLKPE CDFQELKQEI SKRLSIVDMN SLIVKYLDDD 840 SEWVLMTCDA DLHECFHVYK LADIQTIKIS VHLAASPTRI TIGHTGFS

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence

MMCSSLLPTP CNPNAGKSST KFIPGLPVSC TPLAQDVQRN SEGNLTCMEE GDPQPSISLA  60
RTPSEGAAAA VDLDLLEQLL SADNAWLEVA ANTSRSPNFF ATPSNCLTDA SVATTTPANS  120
WWIQPSGAST SVRERFDQAL AYIRETQSDA NVLVQLWVPV KGNDGQLVLT TSGQPFTLDQ  180
RSNSLIQFRE VSTKYQFSAD VASGSSPGLP GRVFIGRLPE WSPDVRYFTS YEYPRISHAQ  240
YLDVHGTMGL PVFERGNSSC LGVIELIMTK QKLNFTSELN TICSALQAVN LTSTEVSSIP  300
RTKLNSASYK DALPEILEVL RAACITHKLP LAQTWVTCAQ QGKRGSRHSD ENYKYCISTI  360
DAACYVNEPQ MQSFHEACSE HHLLQGQGVA GKAFTTNQPC FLPDIGSSTK LEYPLSHHAK  420
IFNLKGAVAI RLRCTRTGIA DFVLEFFLPT DCEVLEEQKA VLDSLSGTMR SVCQTLRVVT  480
DKEMEDEAMR EMNELNSFSP QGKNKVEELS FGDNTREDRE ETSWTTLVGT SQKGSDLAEL  540
HTHGMLSHGG QGSSQAGDQT SKEGSKVKRR TKTEKTVSLQ VLRQYFAGSL KDAAKSLGVC  600
PTTLKRICRQ HGINRWPSRK IKKVDHSLRK LQQIIDSVHG AETAFQLNTL YKDLTNTSVS  660
SDNNLSGSVT VPLANQNNLD FEKHQHHRLS SNIPSTSLSH SSCSQSSDSS PSCSGGATKH  720
SPQVGADQVR LGCLPQHSPV QTLHTEAASI NEHFSGQEAP IDLLQDVAEK ANGEQHMSQS  780
PSSPKQTANV GMRVKVTFGS EKVRFRLKPE CDFQELKQEI SKRLSIVDMN SLIVKYLDDD  840
SEWVLMTCDA DLHECFHVYK LADIQTIKIS VHLAASPTRI TIGHTGFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G19240.1