PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G17730.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 211aa MW: 23366.2 Da PI: 6.3317

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G17730.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.3	1.6e-08	3	33	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ ++ lfC ++ lC++C ++ H OGLUM09G17730.2 3 TICDVCESAPAVLFCVADEAALCRSCDEKVH 33 68**************************998 PP
2	zf-B_box	27.9	5e-09	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g H OGLUM09G17730.2 52 KVQRCDICENAPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91 6799*****************************6655556 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MRTICDVCES APAVLFCVAD EAALCRSCDE KVHMCNKLAR RHVRVGLADP NKVQRCDICE 60 NAPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVAMQQKD 120 PENRTDQKKA PHSVTKEQMA NHHNVSDDPA SDGNCDDQGN IDSKMIDLNM RPVRTHGQGS 180 NSQTQGVDVS VNNHDSPGVV PTCNFEREAN K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	8e-77	DBB family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G17730.2