PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G14860.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 647aa MW: 69700.7 Da PI: 6.085

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G14860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.1	7.6e-33	447	505	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe OGLUM09G14860.1 447 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHE 505 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence
MICERKQSFG GDGPAHLSSD HGSLMEDWMP PPTPSPRTLM SSFLNEDFVS GSFSNIFSDH 60 ESNKPQDQFE RSRELVDLSK EVPSQSARPA FQRDASLDHS LVSPTQRSNS HGGLAERRAA 120 RAGFSVPKID TSRGGSSTVI RSPVAIPPGL SPTTLLESPV FLYNAMAQPS PTTGTLPFLM 180 ASNAKSTIPS ATKMDEDCTF GNDTFSFQPH VGSRRPNFSA AEKGPNACHQ NQSLSNIHQR 240 ESSLQSSFTA VKDITDEKNI KTKTSDSMFG DNHSSDEQDD ETNQNGENSM PPPNHRSGVP 300 LSHTNDPEVN VLENRGSQTC HNSASLWDNA KNDCLQDVQS EVIETRTAAC LPVSTNCDTS 360 IMESQDAVDV SSTLSNEEDD RATHGTASIE CNGDGDETDS KRRKLDALTA ATAAITTTSN 420 IDMGAAASRG VREPRVVVQT TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTHQGCSV 480 RKHVERASHD LKSVITTYEG KHNHEVPAAR NSGHGSSGSG NAPSAPQSNG SQRRQEQGQA 540 SFSQFGGAAP FSSFVLPPRN QFGPSASNFP FGMVPPGMAI PMPSLGSLAP AKMAGHPSTM 600 QGYQGLMIPE GEMKTEPMSQ LGFPAVNPSS SSFQQMMNRP PSFGPQM

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence

MICERKQSFG GDGPAHLSSD HGSLMEDWMP PPTPSPRTLM SSFLNEDFVS GSFSNIFSDH  60
ESNKPQDQFE RSRELVDLSK EVPSQSARPA FQRDASLDHS LVSPTQRSNS HGGLAERRAA  120
RAGFSVPKID TSRGGSSTVI RSPVAIPPGL SPTTLLESPV FLYNAMAQPS PTTGTLPFLM  180
ASNAKSTIPS ATKMDEDCTF GNDTFSFQPH VGSRRPNFSA AEKGPNACHQ NQSLSNIHQR  240
ESSLQSSFTA VKDITDEKNI KTKTSDSMFG DNHSSDEQDD ETNQNGENSM PPPNHRSGVP  300
LSHTNDPEVN VLENRGSQTC HNSASLWDNA KNDCLQDVQS EVIETRTAAC LPVSTNCDTS  360
IMESQDAVDV SSTLSNEEDD RATHGTASIE CNGDGDETDS KRRKLDALTA ATAAITTTSN  420
IDMGAAASRG VREPRVVVQT TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTHQGCSV  480
RKHVERASHD LKSVITTYEG KHNHEVPAAR NSGHGSSGSG NAPSAPQSNG SQRRQEQGQA  540
SFSQFGGAAP FSSFVLPPRN QFGPSASNFP FGMVPPGMAI PMPSLGSLAP AKMAGHPSTM  600
QGYQGLMIPE GEMKTEPMSQ LGFPAVNPSS SSFQQMMNRP PSFGPQM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26440.1	5e-55	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G14860.1