PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G14430.4
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 301aa    MW: 32647.9 Da    PI: 6.4252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G14430.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.64.5e-182978255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  OGLUM09G14430.4 29 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 78
                     889*************************9....9*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MHSELTVRVD GKGGSCSGSG TDQRPSSPRS KHSATEQRRR SKINDRFQIL RELLPHSDQK  60
RDKATFLLEV IEYIRFLQEK VQKFEASVPE WNQENAKILP WSKGQNPGDD LPDPSQFIRN  120
GSSSGYNFTG KPDDNHNMVT SAAASGAQEL VETDHAASVS YRSAETPTNI TNNVTSQAQA  180
QWASPAGVDD CAMNSEMLNN QQLAIDEGTI SLSSQYSQQL LGTLTHALES SGVDLSQASI  240
SVQINLGKRA VKRPGADGSS SSKELPSTSA NNENMGHQLM MLGGGTEELP HPTKRHKSGN  300
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-54bHLH family protein