PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G12360.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 339aa    MW: 37205.6 Da    PI: 5.4593
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G12360.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK50.73.6e-16200250352
           RWP-RK   3 keisledlskyFslpikdAAke.LgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      k+++ +dl++yF+ + k+AA   L +++T+LK  CR + ++RWP+R+i+sl
  OGLUM09G12360.1 200 KTMTKKDLESYFHITQKSAAHIgLSIGTTALKNLCRANDLPRWPYRQIASL 250
                      899*****************84499***********************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MATGGSSSSS NVPSGGAAGG GAGSGKLPMV PVGSIECLRK RCRQLRLLIH VNDHRKAVVV  60
LHAGEDGKPD HVLVQNVSPE GEASVQSTYR IDVSGETPES QAEMLNDWYT SFRMDTTGVL  120
YDSDQNVIYG VPRGHPGGDV PRSLAILPPA PKKNQHGKAP ATESNSSLVE EPLLLVQTDQ  180
PAAIGKRKKF TFPDQRKRVK TMTKKDLESY FHITQKSAAH IGLSIGTTAL KNLCRANDLP  240
RWPYRQIASL DNKFNNNLKK QITGWNLGKA VQGVTKAFKL RKEKEEFYQK IMSSMPEQLQ  300
GIDEIVNSLP EADDDIDIED DEDNDDVIED NDDDNSDEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-08Nin-like family protein