PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G11130.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 376aa MW: 40649 Da PI: 8.2079

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G11130.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41	4.7e-13	45	101	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n ++k+ g ++ +e Aa+a++ a++k++g OGLUM09G11130.3 45 SVYRGVTRHRWTGRFEAHLWDkNSWNEsQNKKGKQGAYDDEEAAARAYDLAALKYWG 101 78*****************8888888775555599****************98 PP
2	AP2	52.2	1.6e-16	144	195	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g OGLUM09G11130.3 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 195 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MAKPRKNSTT TNTSSSGVAA AAAAAVKPKR TRKSVPRESP SQRSSVYRGV TRHRWTGRFE 60 AHLWDKNSWN ESQNKKGKQG AYDDEEAAAR AYDLAALKYW GPDTILNFPL SAYEGELKEM 120 EGQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE 180 EAAMAYDMAA IEYRGLNAVT NFDLSRYIKW LRPGADGAGA AQNPHPMLGA LSAQDLPAID 240 LDAMASSFQH DGHGAAAAAA QLIPARHSLG HTPTTSALSL LLQSPKFKEM IERTSAAETT 300 TTTSSTTTSS SSPSPPQATK DDGASPQCSF PEDIQTYFGC AAEDGAAGAG YADVDGLFFG 360 DLAAYASPAF HFELDL

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MAKPRKNSTT TNTSSSGVAA AAAAAVKPKR TRKSVPRESP SQRSSVYRGV TRHRWTGRFE  60
AHLWDKNSWN ESQNKKGKQG AYDDEEAAAR AYDLAALKYW GPDTILNFPL SAYEGELKEM  120
EGQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE  180
EAAMAYDMAA IEYRGLNAVT NFDLSRYIKW LRPGADGAGA AQNPHPMLGA LSAQDLPAID  240
LDAMASSFQH DGHGAAAAAA QLIPARHSLG HTPTTSALSL LLQSPKFKEM IERTSAAETT  300
TTTSSTTTSS SSPSPPQATK DDGASPQCSF PEDIQTYFGC AAEDGAAGAG YADVDGLFFG  360
DLAAYASPAF HFELDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	2e-91	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G11130.3