PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G11130.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 379aa MW: 41024.5 Da PI: 8.203

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G11130.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.1	7.9e-17	45	104	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g OGLUM09G11130.1 45 SVYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 104 78*****************888866656446***********************98 PP
2	AP2	52.1	1.6e-16	147	198	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g OGLUM09G11130.1 147 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 198 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MAKPRKNSTT TNTSSSGVAA AAAAAVKPKR TRKSVPRESP SQRSSVYRGV TRHRWTGRFE 60 AHLWDKNSWN ESQNKKGKQV YLGAYDDEEA AARAYDLAAL KYWGPDTILN FPLSAYEGEL 120 KEMEGQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA 180 TQEEAAMAYD MAAIEYRGLN AVTNFDLSRY IKWLRPGADG AGAAQNPHPM LGALSAQDLP 240 AIDLDAMASS FQHDGHGAAA AAAQLIPARH SLGHTPTTSA LSLLLQSPKF KEMIERTSAA 300 ETTTTTSSTT TSSSSPSPPQ ATKDDGASPQ CSFPEDIQTY FGCAAEDGAA GAGYADVDGL 360 FFGDLAAYAS PAFHFELDL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MAKPRKNSTT TNTSSSGVAA AAAAAVKPKR TRKSVPRESP SQRSSVYRGV TRHRWTGRFE  60
AHLWDKNSWN ESQNKKGKQV YLGAYDDEEA AARAYDLAAL KYWGPDTILN FPLSAYEGEL  120
KEMEGQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA  180
TQEEAAMAYD MAAIEYRGLN AVTNFDLSRY IKWLRPGADG AGAAQNPHPM LGALSAQDLP  240
AIDLDAMASS FQHDGHGAAA AAAQLIPARH SLGHTPTTSA LSLLLQSPKF KEMIERTSAA  300
ETTTTTSSTT TSSSSPSPPQ ATKDDGASPQ CSFPEDIQTY FGCAAEDGAA GAGYADVDGL  360
FFGDLAAYAS PAFHFELDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	6e-96	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G11130.1