PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G10310.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 363aa    MW: 37585.7 Da    PI: 5.7923
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G10310.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12112155354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+ErrRR+riN  +++Lr+llP+         +Ka+ L +++e++k+L
  OGLUM09G10310.1 112 RSHSEAERRRRQRINGHLARLRSLLPNT--------TKASLLAEVIEHVKEL 155
                      78*************************9........8************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MWEGGSHDAA AQLLPWFVGE SAAAAVGGYG GCVDVVGQGG GGGVFGFGFE AAAAPVVTRQ  60
QRGGAAAAAE GSSRGGGGKP AVVSGLLGSL QAELGRVTAR EIMDAKALAA SRSHSEAERR  120
RRQRINGHLA RLRSLLPNTT KASLLAEVIE HVKELKRQTT AIAAAAAAGD YHGNDEDDDD  180
AVVGRRSAAT QQLLPTEADE LAVDAAVDAE GRLVVRASLC CEDRPDLIPD IARALAALRL  240
RARRAEITTL GGRVRSVLLI TADEQQQQHC DDVDDDEDGH RLLLRHGIDG AGAAADDDEC  300
AASHRRHECI ATVQEALRGV MDRRAAASSG DTSSSGGAVV AGGGGGSIKR QRMNYGVHEQ  360
CSV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-35bHLH family protein