PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G07930.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 365aa MW: 37849.8 Da PI: 5.4676

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G07930.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.4	8.3e-37	75	174	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dC+la+yfpa+++++f n+h+lFG+s+++k+l+++p+e + dam++l++eA+ara+dPv Ga++v+ +l +q+e l+ael OGLUM09G07930.1 75 ACAACKYQRRKCNADCPLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVVVELCRQYEMLHAEL 168 7******************************************************************************************* PP DUF260 95 allkee 100 a+++++ OGLUM09G07930.1 169 AAVQHH 174 *997 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIASSSA SSGGGGAAAP LPPRAPPRVG 60 VGGGGGGGGV GQSQACAACK YQRRKCNADC PLARYFPADE QRRFLNAHHL FGVSKIQKTL 120 RDTPPELHAD AMQALTFEAN ARASDPVGGA ARVVVELCRQ YEMLHAELAA VQHHLKLCRQ 180 QHAAAAAAAA NDPLVANVNP LADPAAEMLF AGAVVPNQND DAMVDAFYAD QQTAGDGDQE 240 QYLVKDEALA AQPPPQQPYE YLNYGTAGDE GSSHAWYTGN GGDADASPPM GLSDQLQQCQ 300 IGAAPPFDVK PELPATMEHG GSVFVEQPEQ KILPAAGSSS SAAAHCQLEL GCSSNAWKVG 360 THVIN

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIASSSA SSGGGGAAAP LPPRAPPRVG  60
VGGGGGGGGV GQSQACAACK YQRRKCNADC PLARYFPADE QRRFLNAHHL FGVSKIQKTL  120
RDTPPELHAD AMQALTFEAN ARASDPVGGA ARVVVELCRQ YEMLHAELAA VQHHLKLCRQ  180
QHAAAAAAAA NDPLVANVNP LADPAAEMLF AGAVVPNQND DAMVDAFYAD QQTAGDGDQE  240
QYLVKDEALA AQPPPQQPYE YLNYGTAGDE GSSHAWYTGN GGDADASPPM GLSDQLQQCQ  300
IGAAPPFDVK PELPATMEHG GSVFVEQPEQ KILPAAGSSS SAAAHCQLEL GCSSNAWKVG  360
THVIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	2e-29	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G07930.1