PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G01340.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 416aa    MW: 44753.6 Da    PI: 9.2483
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G01340.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-05309331123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C +Cg++Fs+   L  H+++H
  OGLUM09G01340.1 309 YECRKCGTMFSSGQALGGHMKSH 331
                      99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    
MAPSRISSSE SERPVGSYRF HIPRQPPRIQ AEGGKRHMII GDRRHGGTAL WRRGSMLPPS  60
LPLWGVEDGH GHVDGSSRQH PSELGSSSAL SVPIGGWIWR LAAAQAHGEV IDGGRCEDEA  120
GDHMQPPPAS SASMAMLSEE RISASGIVVR ERQLHGYGER PFLPCLATMA AKGTAREIST  180
KKIAKKDHGE VGDLTMAMLM PSWISTGNHS SRSPTRCLEQ LPEPSKRAHS EAYGNMQLAT  240
GDLIVGLHKQ ATITVPPPNI SEIGGHLTAH KNNEMTVGKG VQHTIDVSVA KEATRSLVSS  300
ARQSRRGPYE CRKCGTMFSS GQALGGHMKS HNSDERWGDK RVPSAFVGSF LSLITPIDVS  360
NVSVPSSRNP HTSSIPNKEE GRVLVMGAAP LNGVPKGSFR LFGENIAEAP KEEPME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-08C2H2 family protein