PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G00130.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 327aa    MW: 36117.8 Da    PI: 10.4462
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G00130.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57336.91e-11115208297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafy.efvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      +f+r ws  De+++L ++++ ++++g  +  d+++++   +++s++  ++    l +K+ +LK+ + + +     ++ p+ + ++ +  f+l+ 
  OGLUM09G00130.1 115 AFERSWSRADELTILEAMVNHANTHG-GALPDTSDLFaALASSSLDrRDADLPKLADKVHKLKRWYDNARLP---QRCPTDDDDDTRRLFQLCG 204
                      699******************99999.556666665505566677525788899**************9988...6777778888899****** PP

           DUF573  94 kiWg 97 
                      k+Wg
  OGLUM09G00130.1 205 KVWG 208
                      ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MSSWWSWRSL FSSLANANGG GSNADASSGS GTSSPLVHEA QQAAARRRSA RTKKPPEEEA  60
AGSQPQPKTR PSPASKASKA KALLRLGDGE PKKKPAPTPT PTQKRSNKRK RVAPAFERSW  120
SRADELTILE AMVNHANTHG GALPDTSDLF AALASSSLDR RDADLPKLAD KVHKLKRWYD  180
NARLPQRCPT DDDDDTRRLF QLCGKVWGPP STVLRTSPRQ RHKVVGVLVQ GNGANPQQAA  240
APKVKEKRVR RELSELYVLY PSLAQEVKAH ANEYGELIGT AFQFIGDDEA RCYDDRYRKM  300
LVDKLNMKKE HADLTRSLLC TLAGYIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192111KKKPAPTPTPTQKRSNKRKR