PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G00030.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 488aa MW: 54224.3 Da PI: 10.2737

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G00030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	30.8	8.2e-10	80	167	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 fqr ws +De+++L ++ ++++gk +++ ++++++ k + + l +K+r + ++ ++ k+ +++hd+ ++ls+ + OGLUM09G00030.1 80 FQRTWSPNDEVLILEAMAAHRQEHGKV--PTAAELFPVLNGRLDRKrLTYKKLADKLRTFMRRHGRDAKN------GPPTQAHDRRLYDLSRNV 165 9**********************65..56789999999999865278899****9999998888......556899********** PP DUF573 96 Wg 97 W OGLUM09G00030.1 166 WV 167 *6 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MAPTLPVVPA HGEDKKKKKK KKPSQEEEAL PLPLPLPPPD RKRKKASEPV NSPERAKKKK 60 KTATPHEPPS AKQQKRPLPF QRTWSPNDEV LILEAMAAHR QEHGKVPTAA ELFPVLNGRL 120 DRKRLTYKKL ADKLRTFMRR HGRDAKNGPP TQAHDRRLYD LSRNVWVSQT QPPNLSANAN 180 SNIAGGQPNQ HDAMSTAGKA FVKMRDSYPN LTQALLLLVG TDLEKALTAI DETKAQALDL 240 KVSNLKKELS EAVMESATIQ STESSKIPCF PSTKLQPEFG AEIEKNFQLE HLDEMKGAQS 300 QQMVDSKQQQ DKSSAKGIIC ESSESGIRSI VADNNILCNT LQKEMVVQQK LSCGKTKEVT 360 SKHRHPQKLG ELRRVTMHGQ KEDTNNEGGK EVLLLSTTRP HIPVAKATLQ TSSGSKFVGG 420 MPLGSEWYQV FVNDVLKPEA PLLRPPGMKM AEALKSIIAW PCAQVTDKAD FMSETKLYRF 480 AHYKGCGS

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MAPTLPVVPA HGEDKKKKKK KKPSQEEEAL PLPLPLPPPD RKRKKASEPV NSPERAKKKK  60
KTATPHEPPS AKQQKRPLPF QRTWSPNDEV LILEAMAAHR QEHGKVPTAA ELFPVLNGRL  120
DRKRLTYKKL ADKLRTFMRR HGRDAKNGPP TQAHDRRLYD LSRNVWVSQT QPPNLSANAN  180
SNIAGGQPNQ HDAMSTAGKA FVKMRDSYPN LTQALLLLVG TDLEKALTAI DETKAQALDL  240
KVSNLKKELS EAVMESATIQ STESSKIPCF PSTKLQPEFG AEIEKNFQLE HLDEMKGAQS  300
QQMVDSKQQQ DKSSAKGIIC ESSESGIRSI VADNNILCNT LQKEMVVQQK LSCGKTKEVT  360
SKHRHPQKLG ELRRVTMHGQ KEDTNNEGGK EVLLLSTTRP HIPVAKATLQ TSSGSKFVGG  420
MPLGSEWYQV FVNDVLKPEA PLLRPPGMKM AEALKSIIAW PCAQVTDKAD FMSETKLYRF  480
AHYKGCGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	23	DKKKKKKKKP
2	15	21	KKKKKKK
3	15	44	KKKKKKKKPSQEEEALPLPLPLPPPDRKRK
4	16	22	KKKKKKK
5	16	45	KKKKKKKKPSQEEEALPLPLPLPPPDRKRK
6	16	61	KKKKKKKPSQEEEALPLPLPLPPPDRKRKKASEPVNSPERAKKKKK
7	17	46	KKKKKKKKPSQEEEALPLPLPLPPPDRKRK
8	17	62	KKKKKKKPSQEEEALPLPLPLPPPDRKRKKASEPVNSPERAKKKKK
9	17	45	KKKKKKPSQEEEALPLPLPLPPPDRKRKK
10	18	47	KKKKKKKKPSQEEEALPLPLPLPPPDRKRK
11	18	63	KKKKKKKPSQEEEALPLPLPLPPPDRKRKKASEPVNSPERAKKKKK
12	18	46	KKKKKKPSQEEEALPLPLPLPPPDRKRKK
13	19	64	KKKKKKKPSQEEEALPLPLPLPPPDRKRKKASEPVNSPERAKKKKK
14	19	47	KKKKKKPSQEEEALPLPLPLPPPDRKRKK
15	41	45	RKRKK
16	41	61	RKRKKASEPVNSPERAKKKKK
17	42	70	KKKKKKPSQEEEALPLPLPLPPPDRKRKK
18	42	62	RKRKKASEPVNSPERAKKKKK
19	43	63	RKRKKASEPVNSPERAKKKKK
20	54	60	ERAKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	5e-11	GeBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G00030.1