PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G25470.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 232aa    MW: 25091.9 Da    PI: 5.3989
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G25470.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1854104155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta +Aa+a++ a+++l+g
  OGLUM08G25470.1  54 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTALDAARAYDSAARALYG 104
                      679****999.**********8...3.35***********************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MEMDIGEGES CCGRRKQQQQ QQNISSSKSR KCCPLRRSRK GCMKGKGGPE NQRCPFRGVR  60
QRTWGKWVAE IREPNRGARL WLGTFNTALD AARAYDSAAR ALYGDCARLN LLLAAATAGA  120
PPAAAATPSV ATPCSTNDDS NNSSSTTHQQ QLTTMLQLDD DNYTLQPSSS DQEDFETYVT  180
RLPKAEDFGL EGFQEVPLDV LDEAGGGISI WDLSICPADF MAAAAATTAK SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.19e-28ERF family protein