PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G23970.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 302aa    MW: 30675.8 Da    PI: 8.4242
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G23970.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.22.2e-68892293154
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 
                       gt+sCqdCGnqakkdC+h RCRtCCksrgfdCathvkstWvpaakrrerq+ la+a         +++skr+r++  ++++++++ ++ss+e+
  OGLUM08G23970.1  89 GGTISCQDCGNQAKKDCTHLRCRTCCKSRGFDCATHVKSTWVPAAKRRERQNLLASA---------AESSKRPRDS--AAAATSTTPTTSSGEQ 171
                      5899***********************************************999986.........6778999997..6666777788899*** PP

           DUF702  97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++++  +++P+evsseavfrcvr++ vd++++e+aYqt+vsigGhvfkGiL+d G+e+
  OGLUM08G23970.1 172 QQMMVGERFPREVSSEAVFRCVRLGPVDEADAEVAYQTTVSIGGHVFKGILHDVGPEH 229
                      ********************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MAGFPLGGGG GRHGRDDHHR PPVNPTDSAA AFLYPSTASR GGFQLWQQQP PPAAHPFYAQ  60
NIIRFADDPA APPSSRGGRG GGPGGSGGGG TISCQDCGNQ AKKDCTHLRC RTCCKSRGFD  120
CATHVKSTWV PAAKRRERQN LLASAAESSK RPRDSAAAAT STTPTTSSGE QQQMMVGERF  180
PREVSSEAVF RCVRLGPVDE ADAEVAYQTT VSIGGHVFKG ILHDVGPEHS SGGGGGMGGR  240
HAAAGEAGSS PSTAAAPHGG GEGGSSGVAA AAAAVSSSAV VMDPYPTPGP FGGAHFFHGH  300
PR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-49SRS family protein