PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G22840.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 297aa    MW: 33200.1 Da    PI: 9.7763
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G22840.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF849.3e-27128177251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
  OGLUM08G22840.2 128 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 177
                      8***********************************************86 PP
2K-box15.76.1e-072422844385
            K-box  43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                      +++L++ eL+ Le+++ ++l+ +++k +  + + + ++ kk k
  OGLUM08G22840.2 242 VNELNIAELRGLEEAMTNALTVVKNKLMMKVASVLPQSEKKRK 284
                      799********************99988777777776666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MVQLQDLSLS SIISCIKIHS AIIRPLSEEM GAGTMAPTGD SHDAIIPSET WILNSDETSR  60
RPRSPATLPP PVPTPLHGRA AAQQQQQQLA RRGDGEMEML GFVVDRWRSW GMEGGGRRRK  120
KGKVELRRIE DRTSRQVRFS KRRSGLFKKA YELSVLCDAQ VALLVFSPAG RLYEFASSTS  180
SIDTIFGRYW DLLDTTIDLN IEARESRLRQ KERSDDPVPK INHITQCCLI VQVIISVLES  240
NVNELNIAEL RGLEEAMTNA LTVVKNKLMM KVASVLPQSE KKRKSCSISE PRSGVSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-24MIKC_MADS family protein