PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G22820.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 273aa MW: 31465.2 Da PI: 9.1762

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G22820.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.6	1.2e-31	33	83	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s OGLUM08G22820.1 33 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 83 79***********************************************96 PP
2	K-box	74	4.3e-25	128	200	28	100
K-box 28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +e+L R+llGedL+sL +keL++Le+qL++slk++R++++++l++q+ elq+ke++ +e+n++Lr+klee OGLUM08G22820.1 128 TEKLCVYERNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMFSEANRCLRRKLEE 200 57778788**************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MAEKKKKKKK PQSLLVLTSW RSIGMGRGRV ELKRIENKIN RQVTFAKRRN GLLKKAYELS 60 VLCDAEVALI IFSNRGKLYE FCSTQSMTKT LEKYQKCSYA GPETAVQNRE SEFGLKFGIW 120 LKLETDVTEK LCVYERNLLG EDLDSLGIKE LESLEKQLDS SLKHVRTTRT KHLVDQLTEL 180 QRKEQMFSEA NRCLRRKLEE SNHVRGQQVW EQGCNLIGYE RQPEVQQPLH GGNGFFHPLD 240 AAGEPTLQIG YPAEQHEAMN SACMNTYMPP WLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	11	EKKKKKKKP
2	4	10	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	2e-81	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G22820.1