PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G22810.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 455aa MW: 46604.9 Da PI: 7.502

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G22810.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.8	9.6e-41	118	194	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+p v+vsg+e rfCqqCsrfh l+efDe+krsCr+rL++hn+rrrk+q+ OGLUM08G22810.1 118 CAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDEAKRSCRKRLDGHNRRRRKPQP 194 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MEWDLKMPPA ASWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLKLGG 60 LGEFGGGGAQ PRVAVAGEPA KGKGPAAAAT GAAAAASSAP AKRPRAAAAA GQQQCPSCAV 120 DGCKEDLSKC RDYHRRHKVC EAHSKTPLVV VSGREMRFCQ QCSRFHLLQE FDEAKRSCRK 180 RLDGHNRRRR KPQPDPMNSA SYLASQQGAR FSPFATPRPE ASWTGMIKTE ESPYYTHHQI 240 PLGISSRQQH FVGSTSEGGR RFPFLQEGEI SFGTGAGAGG VPMDQAAAAA AASVCQPLLK 300 TVAPPPPPPH GGGGSGGGKM FSDGGLTQVL DSDCALSLLS APANSTAIDV GGGRVVVQPT 360 EHIPMAQPLI SGLQFGGGGG SSAWFAARPH HQAATGAAAT AVVVSTAGFS CPVESEQLNT 420 VLSSNDNEMN YNGMFHVGGE GSSDGTSSSL PFSWQ

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MEWDLKMPPA ASWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLKLGG  60
LGEFGGGGAQ PRVAVAGEPA KGKGPAAAAT GAAAAASSAP AKRPRAAAAA GQQQCPSCAV  120
DGCKEDLSKC RDYHRRHKVC EAHSKTPLVV VSGREMRFCQ QCSRFHLLQE FDEAKRSCRK  180
RLDGHNRRRR KPQPDPMNSA SYLASQQGAR FSPFATPRPE ASWTGMIKTE ESPYYTHHQI  240
PLGISSRQQH FVGSTSEGGR RFPFLQEGEI SFGTGAGAGG VPMDQAAAAA AASVCQPLLK  300
TVAPPPPPPH GGGGSGGGKM FSDGGLTQVL DSDCALSLLS APANSTAIDV GGGRVVVQPT  360
EHIPMAQPLI SGLQFGGGGG SSAWFAARPH HQAATGAAAT AVVVSTAGFS CPVESEQLNT  420
VLSSNDNEMN YNGMFHVGGE GSSDGTSSSL PFSWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	192	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-42	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G22810.1