PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G21760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 19162.6 Da PI: 4.9646 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.1 | 6e-38 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp er +a++++++eA +r++dPvyG++g+i++lq++++ ++ el OGLUM08G21760.1 20 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMAERGNAANTMAMEAYWRVQDPVYGCTGIINRLQEEIRAVQCEL 113 6********************************************************************************************* PP DUF260 95 allkee 100 a+++++ OGLUM08G21760.1 114 ARTQAH 119 *99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence |
MQDPEEDDDD QQQQHPAARR CAACRYLRRR CADDCVLAPF FPASRPHRYA CVHRVFGASN 60 VARLLQSLPM AERGNAANTM AMEAYWRVQD PVYGCTGIIN RLQEEIRAVQ CELARTQAHL 120 AIVVASSQQP PPPPPPPPLP SPPPPPQQQQ QEEQSPPPLL DPADEFLNLD GL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-31 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM08G21760.1 |